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Challenge Yourself

This activity will test all of the skills that you learned in the previous lessons.

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Automate Workflows Using Loops in R

At the end of this activity, you will be able to:

  • Use for-loops to handle repetitive tasks
  • Bind multiple data frames together by row

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Handle Missing Data in R

At the end of this activity, you will be able to:

  • Understand why it is important to make note of missing data values.
  • Be able to define what a NA value is in R and how it is used in a vector.

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Use tidyverse group_by and summarise to Manipulate Data in R

At the end of this activity, you will be able to:

  • Use the group_bysummarise and mutate functions to manipulate data in R.
  • Use readr to open tabular data in R.
  • Read CSV data files by specifying a URL in R.
  • Work with no data values in R.

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Get Started with Clean Coding in R

At the end of this activity, you will be able to:

  • Identify issues that can be improved in your code in the areas of syntax, modularity, documentation and expressiveness.
  • Define syntax, documentation, modularity and expressiveness.

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Setting Up Your Computer for R Tidyverse Clean Coding

Welcome to the first lesson in the Introduction to Clean Coding and the tidyverse in R module. When working with data, you often spend the most amount of time cleaning your data. Learn how to write more efficient code using the tidyverse in R.

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Test

Testing

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Haley Duke onto Testing 9/07/17

Published version of seed dispersal lab

I wanted to make sure everyone saw this update to the activity and associated video link.

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J. Phil Gibson onto Selected Materials

Plant Diversity Lab

Alida asked about an alternative to using plants and microscopes.

I have an activity called Botanical Phylocards that can accomplish the same thing.

Powerpoint files of the cards are posted here if you would like to use or edit.

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J. Phil Gibson onto Selected Materials

Algae Ecosystem Prep notes

Here are the prep notes I use for the algae ecosystem module.

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J. Phil Gibson onto Selected Materials

NASA --Hurricanes and Aerosols Simulation of 2017 Season

2017 Hurricanes and Aerosols Simulation

Released on November 13, 2017

Tracking aerosols over land and water from August 1 to November 1, 2017. Hurricanes and tropical storms are obvious from the large amounts of sea salt particles caught up in their swirling winds.

The dust blowing off the Sahara, however, gets caught by water droplets and is rained out of the storm system.

Smoke from the massive fires in the Pacific Northwest region of North America are blown across the Atlantic to the UK and Europe.

This visualization is a result of combining NASA satellite data with sophisticated mathematical models that describe the underlying physical processes.

Music: Elapsing Time by Christian Telford [ASCAP], Robert Anthony Navarro [ASCAP]

Video downloads available with and without narration AND in several video formats.

Complete transcript available.

Watch this video on the NASA Goddard YouTube channel.

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Hurricane_Visualization-Simulations

NASA visualization of the 2017 hurricane season and list of interactive simulations

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NASA 2017 Hurricanes and Aerosols Simulation

https://svs.gsfc.nasa.gov/12772

2017 Hurricanes and Aerosols Simulation

Released on November 13, 2017

Tracking aerosols over land and water from August 1 to November 1, 2017. Hurricanes and tropical storms are obvious from the large amounts of sea salt particles caught up in their swirling winds. The dust blowing off the Sahara, however, gets caught by water droplets and is rained out of the storm system.Smoke from the massive fires in the Pacific Northwest region of North America are blown across the Atlantic to the UK and Europe.

This visualization is a result of combining NASA satellite data with sophisticated mathematical models that describe the underlying physical processes.

Music: Elapsing Time by Christian Telford [ASCAP], Robert Anthony Navarro [ASCAP]

Video downloads available with and without narration AND in several video formats.

Complete transcript available.

Watch this video on the NASA Goddard YouTube channel.

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Hurricane Visualizations and Interactive Simulations

Hurricane Visualizations of 2017 season from NASA and Interactive Hurricane Simulations 

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Additional Intro Ecology Figures of the Day

Used in an Integrated Biological Principles II Class (Intro to Ecology/Evolution/Physiology) at University of Richmond.  

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BIOMAAP 'Official' Figure of the Day

Each figure is presented as a pair of slides, the first with all axis labels and legends removed, and the second as the original figure. Students are asked to make observations about the unlabeled version and guess what pattern is represented.

Figures are roughly ordered by difficulty, and are intended to be incorporated one at a time into different class meetings over the course of the semester. The notes section for each figure gives some ideas for potential student responses or interesting features of the graphs.

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Arietta Fleming-Davies onto Figure of the Day

Science in the Classroom Annotated Papers

Science in the Classroom (SitC) is a collection of freely available annotated research papers from the Science family of journals. Annotations include vocabulary, methods, descriptions of prior research, and explanations of major conclusions. Each paper has an educator's guide outlining connections to science competencies within STEM learning frameworks and standards, as well as suggested activities and resources for further exploration of the subject.

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UVA Evolution Ed

Teaching evolution using the Anole research system and HHMI BioInteractive resources

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Biology Students Math Attitudes and Anxiety Program

BIOMAAP aims to help undergraduate biology majors improve their attitudes and decrease their anxiety towards mathematics, and thus to help faculty teach quantitative topics in biology

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Teaching quantitative biology: goals, assessments, and resources

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The Essential Elements of Team-Based Learning

This resource provides more information Team-Based Learning (TBL), a student-centered learning resource referenced in Vision & Change. The paper provides an overview of TBL implementation and elaborates on the use of IF-AT cards as assessment instruments for college and university faculty.

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Link to MBVI paper in CBE-LSE

This is an attitudes and assessments instrument available through the Aikens lab at UNH

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Carrie Diaz Eaton onto Assessment tools

Chapter 16: Correlation between numerical variables

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Pramod Pandey onto rpro