Video from Nova on how the tests work.

• International Society for Computational Biology (ISCB)
• Online
• ISCB education pages

Our Vision is to see high quality computational biology education and training accessible to all interested communities across the world, and instilled in all life science-related educational programs.

Our Mission is to promote worldwide education and training in computational biology by providing guidance and support for educational resources and community activities.

The information contained within this section covers two general areas:

1. World-wide educational and training resources for all levels from novices to advanced practitioners of computational biology
   • Online Courses in Bioinformatics
2. Resources that enhance learning and preparation geared towards a career in computational biology
   • Articles on Bioinformatics Education

In addition to the content generated by ISCB Education, we also solicit and collect input and information from the larger computational biology community to be made available through these pages.

• The Jackson Laboratory
• The Jackson Laboratory, ME
• The Jackson Laboratory education and learning resources

The Genomic Education team at The Jackson Laboratory is committed to creating diverse and inclusive educational programs where all students, employees and visitors feel valued and are empowered to participate in our mission to improve human health though genomics research, scientific resources and education. We believe human diversity is an essential ingredient for empowering the global biomedical community, and therefore our programs should reflect, embrace and celebrate the diversity of our world ... JAX's programs for high school and undergraduate students and teachers predate the founding of the Jackson Laboratory by six years. Including our flagship Summer Student Program, JAX offers opportunities for academic year research, teacher professional development, and the Maine State Science Fair.

Courses are designed to impart knowledge through intensive lectures, hands-on training and informal interactions. Workshops offer extensive hands-on training, teaching participants how to perform specific techniques, interspersed with lectures or seminars.

• Global Organisation for Bioinformatics Learning, Education & Training
• Online
• GOBLET training portal

This portal allows you to browse our course pages and training materials, to download content of interest and/or to upload course pages and training materials.

NOTE: this page has not been updated for more than 4 months.

• Galaxy Training Network
• Online
• Galaxy Training web site

This web site is a gateway for lessons, tutorial, and examples of using Galaxy for genomics education and analysis. Among other things, links to tutorials for the following subjects are provided:

• Introduction to Galaxy Analyses
• Assembly
• Computational Chemistry
• Ecology
• Epigenetics
• Genome Annotation
• Imaging
• Metabolomics
• Metagenomics
• Proteomics
• Sequence Analysis
• Statistics and Machine Learning
• Transcriptomics
• Variant Analysis
• Visualisation

Events with Galaxy-related content (includes virtual events)

• Galaxy Event Horizon (list of upcoming and past events)
• Galaxy Events Google Calendar

The homework assigned through the files follows a presentation on qPCR. The goal of the assignment is for the students to get primer pairs that do not bind to human DNA or the SARS Coronavirus that caused the 2003 epidemic. It is easy to assess through Primer-Blast or the UCSC in-silico PCR tool (links provided above).

This is an activity that took place in an Advanced Genetics class that meets in a computer lab. The activity aims to construct a phylogenetic tree of different Coronaviruses, including a few strains of SARS-CoV2. The sequences were pulled from the Virus Pathogen Database and Genbank. Since the activity initially took place in mid-February, there are a lot more available sequences in the databases, while at least one of the sequences included has been retracted. The homework in the end is another application of the skillset the students acquired through the activity, and can be modified based on the course's objectives.

NCCSTS requires a $25 annual subscription for individuals.  Materials are peer reviewed, and include student handouts and teacher materials.  We are sharing information about recent cases published on COVID19 from this organization:

"COVID-19: Where Did You Come From, Where Did You Go?” by authors from North Carolina State University: Stefanie H. Chen, Carlos C. Goller, and Melissa C. Srougi

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1125&id=1125

"Put to the Test: RT-PCR and Antibody Detection Diagnostic Tools for COVID-19 ” by a team of authors from Brandeis University:  Melissa S. Kosinski-Collins, Lindsay Mehrmanesh, Jessie Cuomo and Kene N. Piasta.

Fatally Flawed? Early Genetic Testing for the COVID-19 Virus” by Amy C. Groth, Department of Biology, Eastern Connecticut State University

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1123&id=1123

“Social Distancing in the Midst of COVID-19” is by Jason C. Cochrane, Science Department, Mountain Vista High School, Highlands Ranch, CO. 

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1113&id=1113

 “Pandemic Pandemonium: Why Can’t We Just Treat COVID-19?” by a team of authors from Brandeis University:  Melissa S. Kosinski-Collins, Lindsay Mehrmanesh, Jessie Cuomo and Kene N. Piasta.

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1114&id=1114 

"Coronavirus Quandaries for Patients with Cardiovascular Disease” by Janine Bartholomew, Department of Biology, Carlow University, Pittsburgh, PA

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1121&id=1121

“Where’s the Evidence? Confronting Public Panic About COVID-19” by Laura Pickell, Department of Biology, Cégep Heritage College, Gatineau, QC, Canada

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1120&id=1120

The CIRTL Network is providing various trainings to assist in the sudden transition to online learning as campuses close to slow the spread of COVID-19. These trainings are offered both as synchronous online workshops and in recorded modules on YouTube.

Crowd-sourced table of online teaching practices that align to the UDL guidelines specific to the affective network

Use of synthetic biology approaches in cancer treatment.

Using synthetic biology to produce the antimalarial drug artemisinin.

Synthetic bacterial genomes as created by Craig Venter's research group.

Review article from 2019

Creation of a semi-synthetic organism whose DNA harbours two additional letters that form a third, unnatural base pair.

Demonstration of inactivation of porcine endogenous retroviruses using CRISPR technology to enable porcine-to-human xenotransplantation of organs.

Creation of synthetic versions of viral and bacteriophage genomes to understand principles of genome organization and design

A review article on designing bacteria for diagnostics and therapeutics

A synthetic E. coli genome that has been designed to use only 61 of the 64 available codons. Includes webinar from Genewiz on design and assembly of the genome.

Use of synthetic biology to improve the signal-to-noise ratio in coronavirus diagnostics