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Running undergraduate research groups

Topaz_Student_Research.pdf 2 MB

Presentation by Chad Topaz

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Carrie Diaz Eaton onto Funding and other logistic matters for undergraduate research
@ 5:39 pm on 01 Jun 2017

A guide to the R package manager

https://www.datacamp.com/community/tutorials/r-packages-guide link

How to extend the functionality of R by installing and loading "packages"

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Colin Reimer Dawson onto Computing Tools (R)
@ 5:36 pm on 01 Jun 2017

Funding for applied math undergraduate student research

https://docs.google.com/presentation/d/1p1Tqs36pUGIX6OIlG9Qa0avOJqYnSwOZwBNydcPDKGE/edit link

Presentation by Chad Topaz

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Carrie Diaz Eaton onto Funding and other logistic matters for undergraduate research
@ 5:33 pm on 01 Jun 2017

Tutorial on the curve fitting tool (CFTool)

http://physweb.bgu.ac.il/~machlufs/files/CFTool_Tutorial.pdf link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:31 pm on 01 Jun 2017

Some plotting information

http://www2.math.ou.edu/~npetrov/matlab_plotting.pdf link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:28 pm on 01 Jun 2017

Overview of some ode solvers in MATLAB, including stiff solver

http://fa.ee.sut.ac.ir/Downloads/AcademicStaff/5/Courses/39/ode%202.pdf link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:25 pm on 01 Jun 2017

SACNAS

http://sacnas.org/ link

Society for the Advancement of Chicanos and Native Americans in Science

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Carrie Diaz Eaton onto Diversity and Inclusion
@ 5:25 pm on 01 Jun 2017

Common R Commands ("Cheat Sheet") --- based on `mosaic` package

http://colinreimerdawson.com/stat113/labs/R_cheatsheet.pdf link

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Colin Reimer Dawson onto Computing Tools (R)
@ 5:24 pm on 01 Jun 2017

Modeling team group contract

TeamContract.docx 56 KB

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Blerta Shtylla onto Foundational and/or entry level modeling courses
@ 5:21 pm on 01 Jun 2017

Tutorial for numerical solutions of ODEs + supporting code

http://faculty.olin.edu/bstorey/Notes/DiffEq.pdf link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:19 pm on 01 Jun 2017

MATLAB intro with more ODEs, some optimization

http://www.brown.edu/Departments/Engineering/Courses/En4/Tutorials/MATLAB_tutorial_2012.pdf link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:12 pm on 01 Jun 2017

The R Graphics Cookbook

https://ase.tufts.edu/bugs/guide/assets/R%20Graphics%20Cookbook.pdf link

"Recipes" for data visualization in R using the ggplot2 package

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Colin Reimer Dawson onto Computing Tools (R)
@ 5:08 pm on 01 Jun 2017

Erin Bodine's webpage: MATLAB & LaTeX tutorials

https://sites.google.com/site/profbodine/tutorials link

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:06 pm on 01 Jun 2017

A Student's Guide to R (Simplified R for Data Analysis via Project MOSAIC)

https://cran.r-project.org/doc/contrib/Horton+Pruim+Kaplan_MOSAIC-StudentGuide.pdf link

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Colin Reimer Dawson onto Computing Tools (R)
@ 5:02 pm on 01 Jun 2017

A more detailed MATLAB intro (definitions, matrices, linear algebra, etc)

introduction-to-matlab.pdf 323 KB

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Julie Blackwood onto Computing tools (MATLAB)
@ 5:00 pm on 01 Jun 2017

Crash Course in Basic Stats via R (DataCamp)

https://www.datacamp.com/courses/intro-to-statistics-with-r-introduction link

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Colin Reimer Dawson onto Computing Tools (R)
@ 4:57 pm on 01 Jun 2017

Machine Learning Basics in R

https://www.datacamp.com/community/tutorials/machine-learning-in-r link

Introduction to basic machine learning ideas through a guided R-based tutorial (via DataCamp).

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Colin Reimer Dawson onto Computing Tools (R)
@ 4:55 pm on 01 Jun 2017

Swirl interactive tutorial to learn R programming

http://swirlstats.com/students.html link

Instructions to download and install R and RStudio, and run an interactive tutorial within the R console.

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Colin Reimer Dawson onto Computing Tools (R)
@ 4:53 pm on 01 Jun 2017

Video Matlab Introduction Stuff

https://drive.google.com/open?id=0B9mZLj6cM4XXaWJ0MUpjLUdIb2s

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Benjamin R Morin onto Computing tools (MATLAB)
@ 4:52 pm on 01 Jun 2017

A short intro to MATLAB (vectors, loops, an ODE script)

MatlabLab.pdf 346 KB
MatlabLab.tex 37 KB

Written for a mathematical ecology course at Williams. Some of it is Williams-specific, but can be modified accordingly.

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Julie Blackwood onto Computing tools (MATLAB)
@ 4:50 pm on 01 Jun 2017

Chad Topaz's modeling-without-a-textbook course

Topaz_Modeling.pdf 3 MB

Talk given at the SIAM Annual Meeting, 2016

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Chad Topaz onto Mathematical modeling course
@ 4:44 pm on 01 Jun 2017

Team Member Evaluation Rubric

team_member_eval.doc 35 KB

We developed these team member evaluations for a summer research program where we had teams of mathematicians and biologists. I'm not sure they were that useful after the research was done, but it might be more useful as a way to discuss what we expect from our team members.

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Ami Radunskaya onto Resources for Advising Undergraduate Research
@ 4:35 pm on 01 Jun 2017

Research team organization

ResearchGroupRoles.doc 34 KB

This was written for project teams in a modeling class, but it can be modified for a longer research project.

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Ami Radunskaya onto Foundational and/or entry level modeling courses
@ 4:33 pm on 01 Jun 2017

Mathematical Writing

http://www.people.vcu.edu/~rhammack/BookOfProof/Contrapositive.pdf link

So this is the chapter on contrapositive proof from Book of Proof by Richard Hammack. But I'm linking this because section 5.3 is about guidelines for mathematical writing - it's more proof-y but still many applicable things.

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May Mei onto Writing & Presentation Tips
@ 4:02 pm on 01 Jun 2017

Latex and Matlab tutorials by Erin Bodine

https://sites.google.com/site/profbodine/tutorials link

On Erin Bodine's site

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Carrie Diaz Eaton onto Foundational and/or entry level modeling courses
@ 4:01 pm on 01 Jun 2017

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