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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    GBIF Tutorial - BLUE Resource
    A user guide and video instructions for GBIF

    Keywords: Querying databasesdatabasedata in the classroombiodiversity informaticsbiodiversity collections

    2206

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    679

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    iDigBio Tutorial - BLUE Resource
    A user guide and video instructions for iDigBio

    Keywords: databasesQuerying databasesdata in the classroombiodiversity informaticsbiodiversity collections

    2468

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    745

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    0

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    Arctos Tutorial - BLUE Resource
    A user guide and video instructions for Arctos

    Keywords: databasesdata in the classroombiodiversity informaticsbiodiversity collections

    1657

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    528

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    Exploring Data with BISON
    A module to explore aggregated observation and collection information, through BISON, or Biodiversity Information Serving Our Nation (https://bison.usgs.gov), a tool for visualizing GBIF data.

    Keywords: Querying databasesdata in the classroombiodiversity informaticsnatural history collectionsGBIFBISON

    1783

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    553

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    Cleaning Biodiversity Data: Excel
    Access and clean an open source polar bear dataset using Excel.

    Keywords: data in the classroombiodiversity informaticsData cleaning

    2363

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    An Introduction to Biodiversity Databases and Specimen Images
    In this module, students will be introduced to some biodiversity data resources and how to search for and download herbarium specimen images. They will be asked to think critically about the...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

    1511

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    559

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    Building Biodiversity Datasets for Invasive Species
    A module guiding students through the process of mapping biodiversity data and building a biodiversity dataset to study the spread and impacts of the invasive aquatic plant species, European...

    Keywords: Management Of Datanatural historyField researchconservation ecologyAquatic invasive speciesbiodiversity informatics

    426

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    180

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    Communicating with Data: Digital Data Resources
    Students access, clean, configure, and standardize a dataset and create a relevant and scientifically valid data visualization to communicate science.

    Keywords: data in the classroomdata visualizationdigital resourcesbiodiversity informaticsbiodiversity collections

    1606

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    450

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

    2273

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    1020

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    Following the Data
    The video and exercise provides insight into how researchers are using digital data resources to investigate biodiversity in prairie fen wetlands.

    Keywords: data in the classroomprocess of sciencebiodiversity informatics

    2887

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    Data is the New Science
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

    3121

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    1202

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    Data is the New Science - Modified and combined with Following the Data Module
    In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

    1231

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    603

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    Biodiversity Literacy in Undergraduate Education (BLUE): Building standards and resources for using collections data in the classroom
    Abstract for poster on using collections data presented at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data sciencenatural history collections2019 QUBES/BioQUEST Summer WorkshopBLUE

    1076

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    115

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    Natural history collections data and Biodiversity Literacy in Undergraduate Education (BLUE)
    Presentation made by Elizabeth Ellwood et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of...

    Keywords: Ecological Society of America

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    363

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    Identifiers in Digital Natural History Collections
    This is a collection of resources focusing on GUIDs (Globally Unique Identifiers) on what they are, what role they play in digital natural history collections, and how to incorporate them in...

    Keywords: idigbioStudy guidedata managementnatural history collectionsBLUEdigitized natural history collectionsidentifiers

    259

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    98

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    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

    1273

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    Using Digitized Collections-Based Data in Research: A Hands-On Crash Course in Ecological Niche Modeling
    Step-by-step, hands-on instruction on ways to access and download these specimen data, how to process climate layer data, and how to apply Maxent software to construct ecological niche models.

    Keywords: ecology labbiodiversity informaticsnatural history collectionsMicrosoft Excelbiodiversity collectionsRstatsecological niche modelingQGISENMToolsMaxent

    1806

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    498

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    NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    Keywords: RRStudioCommunity EcologyBioinformatics Educationbiodiversity informaticsNMDSfungiordination

    1522

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    1058

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    Backward Design with Digital Data
    Best practices for designing educational modules using biodiversity data

    Keywords: data in the classroombackward designbiodiversity collections

    1449

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    340

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    Conducting Biodiversity Science in the 21st Century (Poster)
    A poster summarizing how museum resources can be used for conducting biodiversity science in the 21st century including in research, education and in increasing inclusivity and diversity in STEM.

    Keywords: researchmuseumPosterBiodiversitynatural history museumsOpen Datadata literacydiversityinclusionBLUEdigitized natural history collectionsbiodiversity data

    313

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    112

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