You are here: Home / Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Social Distancing Simulation in NetLogo
    A NetLogo simulation that shows the effects of social distancing on the spread of infectious disease.
    841

    views

    380

    downloads

    0

    comments

    0

    adaptations

    Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes
    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    Keywords: simulationLac Operon

    1333

    views

    619

    downloads

    0

    comments

    0

    adaptations

    Wolf Sheep Predation Simulation Exercise
    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    Keywords: simulationecologyIntroductoryNetLogoagent-based modelingagent-based modelLabbioinformaticspredator-preyUndergraduateNIBLSEInstructional SettingAudience LevelActivity LengthLess than 1 hoursimulation cycleC1. Role of bioinformaticsC6. ModelsReviewed at NIBLSEagent based modleing

    2578

    views

    461

    downloads

    0

    comments

    0

    adaptations

    Cell Collective: Computational Modeling and Simulation Designed with the Classroom in Mind
    This working group collaborated on content and pedagogy surrounding the use of Cell Collective to integrate computational modeling and simulation into undergraduate biology curriculum.
    802

    views

    727

    downloads

    0

    comments

    0

    adaptations

    1996-D_Erdman-MM_Morelock-A Study of Kinetics
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: simulationkineticsparameter estimationEnzymesubstratesavingscompartmentstomachbloodginseng

    95

    views

    28

    downloads

    0

    comments

    0

    adaptations

    Altruism Simulation Activity
    An altruism activity that uses a NetLogo altruism simulation.

    Keywords: Evolutiontool:netlogoanimal behavioraltruism

    1447

    views

    675

    downloads

    0

    comments

    0

    adaptations

    2020-TeachingModule-SpreadOfCommonColdSimulation
    This simulation is meant to introduce the idea of a differential equation model and investigate the impact of heightened hygiene and decreased interactions on the spread of an infectious disease....

    Keywords: simulationmoduleinfectious diseasediseasespreadTeaching Modulespread of disease

    172

    views

    507

    downloads

    0

    comments

    0

    adaptations

    2000-Erdman-Morelock-A Study of Kinetics The Estimation and Simulation of Systems of First-Order Differential Equations
    This paper introduces new and old features of the SAS System for the estimation and simulation of systems of first-order differential equations with emphasis on examples in kinetics.

    Keywords: kineticsSAScompartmentpharmacokinetics

    106

    views

    27

    downloads

    0

    comments

    0

    adaptations

    1-002-Tossing-ModelingScenario
    We offer students simulation experience or data from a simulation and ask them to model the simulation using several approaches, to include exponential decay fit, difference equation, and...

    Keywords: Modeling and simulationexponentialdecaydice

    151

    views

    142

    downloads

    0

    comments

    0

    adaptations

    Web Popgen
    A Hardy-Weinberg simulation program.

    Keywords: Hardy-Weinbergpopulation geneticscomputer simulationsGenetic DriftmutationNatural Selection

    1828

    views

    296

    downloads

    0

    comments

    0

    adaptations

    Michaelis-Menten Enzyme Kinetics
    In this simulation, equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions.

    Keywords: ExcelResources @ ESTEEMMichaelis-Mentenenzymesenzyme kinetics

    1402

    views

    309

    downloads

    0

    comments

    0

    adaptations

    Populus: Simulations of Population Biology
    Link to Populus Software

    Keywords: simulationpopulation growthpopulus

    2023

    views

    301

    downloads

    0

    comments

    0

    adaptations

    1-101-ClassMMDeathImmigration-ModelingScenario
    We offer students an opportunity to generate unique data for their team on a death and immigration model using m&m's and then pass on the data to another student team for analysis with a model they...

    Keywords: simulationimmigrationdata collectiondeath

    226

    views

    166

    downloads

    0

    comments

    0

    adaptations

    3-076-CircuitBuilding-ModelingScenario
    In this project students will establish a mathematical model for an electric circuit as a second-order ordinary differential equation with constant coefficients.

    Keywords: simulationexperimentMultisimcircuitinductancecapacitorKirchhoff's Voltage Lawresistor

    171

    views

    292

    downloads

    0

    comments

    0

    adaptations

    1-062-BacteriaGrowth-ModelingScenario
    We offer students a simulation experience or data from a simulation and ask them to model the simulation using several approaches: exponential growth fit, difference equation, differential...

    Keywords: bacteriaexponentialgrowth

    186

    views

    209

    downloads

    0

    comments

    0

    adaptations

    Cell Collective: Learning biology with modeling and simulations
    Cell Collective is an online, research-grade modeling platform adapted to engage students in creating and simulating dynamic models of biological processes.

    Keywords: modelingsimulationSimulationsCell Collective

    927

    views

    592

    downloads

    0

    comments

    0

    adaptations

    1-084-GoingViral-ModelingScenario
    Students employ randomization in order to create a simulation of the spread of a viral disease in a population (the classroom). Students then use qualitative analysis of the expected behavior of...

    Keywords: simulationlogisticrandomfittingpartial fractions

    192

    views

    83

    downloads

    0

    comments

    0

    adaptations

    1-125-DiceyPopulation-ModelingScenario
    We offer students an opportunity to generate data for their team on a death and immigration model using 12 and 20 sided dice and then pass on the data to another student team for analysis with a...

    Keywords: simulationimmigrationdeathdice

    121

    views

    82

    downloads

    0

    comments

    0

    adaptations

    2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
    This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.

    Keywords: simulationparameter estimationshoppingfittingbehaviour

    93

    views

    26

    downloads

    0

    comments

    0

    adaptations

    1-001d-HotelPopulationDecay-ModelingScenario
    You will be modeling the following situation: 100 people are in a hotel. Each day, each person has a random chance of 50% of leaving the hotel. No new people enter the hotel. Before you run the...

    Keywords: simulationlogisticexponential decayfitting

    253

    views

    90

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search