Browse Genome Solver Resources:


Lesson I - Introduction to Genome Solver

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.
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10.31.2018

Lesson II - Databases

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial genomics.
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10.31.2018

Lesson III - Annotation

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all the A's, C's, T's, and G's.
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10.31.2018

Lesson IV - Comparative Genomics

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools available for looking at genes across different genomes.
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10.31.2018

Lesson V - Phylogenetics

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.
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10.31.2018

Lesson VI - The Community Science Project

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage genes embedded in bacterial genomes.
labs, agent-based modeling, Discrete Difference Equations, matrix models, course, biomath course, demonstration, in-class activity, lab protocol, problem set, Bioinformatics Education, Bioinformatics and Genomics, introductory, Lab, Online course, Teaching material, Lecture, High School, Undergraduate, Homework, Majors, Non-majors, Extended Project
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10.31.2018

Complete Set of Lessons

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with an authentic community research project.
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11.01.2018

Pre-lesson: Introduction to BLAST

Anne Rosenwald, Gaurav Arora, Vinayak Mathur

Version: 1.0

Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.
R, pathways, Bioinformatics Education, Bioinformatics and Genomics, gene regulation, trophic cascades, regulation, cross-scale, cholesterol synthesis, Lac Operon, Yellowstone, introductory, Lab, Teaching material, Lecture, High School, Undergraduate, Majors, Non-majors, 1 Hour
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02.21.2019

Lesson VII - Synteny

Gaurav Arora, Anne Rosenwald, Vinayak Mathur

Version: 1.0

The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.
Bioinformatics Education, introductory, Lab, Online course, Teaching material, Lecture, High School, Undergraduate, Faculty, Homework, Majors, Non-majors, Less than 1 hour
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09.08.2019