QIIMES and Pipes

QIIMES and Pipes is a working group branching from the 2016 National Academies Special Topics Summer Institute on Quantitative Biology. This group is working specifically with:

1) Metagenome Analyses Choices
    a. What can QIIME do?
    b. Coding platform to introduce people to:
        i. Coding
        ii. What does analysis mean?
        iii. What tools to use?
    c. What gene to use?
        i. CytB for plants.
        ii. Co1 for animals
        iii. 16s for Bacteria, 18s for fungi, INT(?)
    d. Pipes instead of QIIME?
        i. G-CAT? Cyverse?
2) Jump in Jupyter: Activities and Teaching – Ways to reach out with classroom materials. Way to make active classroom activities on processing and interpreting data
    a. Visualizing Coding
    b. Understanding what 16s analysis is actually doing
    c. Galaxy, Remote Clusters, Analysis on Galaxy? G-CAT? Cyverse?
3) Extensions:
    a. Accessibility 

If you would like to know more about this group, please request membership. 

The QIIMES & Pipes Group Organizational Facilitator is Reid Schwebach.

The QIIMES & Pipes Group Technical Facilitator is Carlos Goller. 

The QIIMES & Pipes Group QUBES Liaison is Gaby Hamerlinck. 

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Members of this group are listed below: 

Hayley OrndorfCarlos C. GollerJim SmithGabriela HamerlinckChristina GarciaAnne RosenwaldIrina KrylovaJoseph Mario BattistelliKathleen BerlynWynn MeyerReid SchwebachLauren Smith