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    Potential Scenario
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    2018-Banerjee-EtAl-Prey-Predator Model with a Nonlocal Bistable Dynamics of Prey
    The primary goal of our present work is to consider nonlocal consumption of resources in a spatiotemporal prey-predator model with bistable reaction kinetics for prey growth in the absence of predators.
    predator-preynonlocal consumptionTuring bifurcationspatial Hopf bifurcationspatio-temporal patternprey growth
    Potential Scenario
    294

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    78

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    2017-Suebcharoen-Analysis of a Predator-Prey Model with Switching and Stage-Structure for Predator
    This paper studies the behavior of a predator-prey model with switching and stage-structure for predator.
    stage structurepredatorpreybifurcationswitching
    Potential Scenario
    130

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    48

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    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.
    phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay
    Modeling Scenario
    250

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    218

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    1-135-FishHarvesting-ModelingScenario
    This short activity will walk students through a guided list of questions to help them to understand how the stability of equilibrium changes with changes in a model parameter, in this case the rate of harvesting fish.
    population dynamicsfishstabilitybifurcationharvest
    Article or Presentation
    173

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    52

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    2010-Kar-Chakraborty-Bioeconomic_modelling_of_a_prey_predator_system_using_differential_algebraic_equations
    We propose a biological economic model based on prey-predator dynamics where the prey species are continuously harvested and predation is considered with type II functional response.
    economicsbifurcationharvestfisheryequilibriumdifferential algebraic equation
    Potential Scenario
    154

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    56

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    2006-Cooke-Elderkin-Huang-Predator-Prey interactions with delays due to juvenile maturation
    This paper focuses on predator-prey models with juvenile/mature class structure for each of the predator and prey populations in turn, further classified by whether juvenile or mature individuals are active with respect to the predation process.
    predator-preyhost-parasitebifurcationage structrematuration delay
    Potential Scenario
    238

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    57

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    2011-Radouane_Yafia-A Study of Differential Equations Modeling Malignant Tumor Cells in Competition with Immune System
    In this paper, we present a competition model of malignant tumor growth that includes the immune system response. The model considers two populations: immune system (effector cells) and population of tumor (tumor cells).
    Immunologytumorhopf bifrucation
    Potential Scenario
    134

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    60

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    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.
    gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing
    Potential Scenario
    185

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    77

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    2014-Allen-EtAl-Perturbations in Epidemiological Models -When zombies attack we can survive
    In this paper, we investigate the existence of stability-changing bifurcations in epidemiological models used to study the spread of zombiism through a human population.
    epidemiologydynamical systemszombiesbifurcationperturbation
    Potential Scenario
    131

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    39

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    2008-Yang-EtAl-Differential Equation Model of HIV Infection of CD T-Cells with Delay 
    Abstract: An epidemic model of HIV infection of CD4+ T-cells with cure rate and delay is studied. We include a baseline ODE version of the model, and a differential-delay model with a discrete time delay.
    virusT cellsHopf bifurcationendemic equilibrium
    Modeling Scenario
    275

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    133

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    1-143-PopulationModelVariationsMATLAB-ModelingScenario
    Students will walk through a detailed derivation and review of basic population models (exponential and logistic) to create and understand variations of those models.
    population dynamicsecologylogistic growthbifurcation theoryslope fieldsextinctionharvestingqualitative analysisstocking
    Potential Scenario
    183

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    80

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    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the only distinction is in their disease state.
    sensitivitydiseaseinfectionthresholdcompartmentbifrucation
    Potential Scenario
    199

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    57

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    2003-Yildirim-Mackey-Feedback Regulation in the Lactose Operon
    A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented.
    mRNAlactoselactose operonfeedback regulation
    Free Online Textbook
    163

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    58

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    2014-Andre_De Ross-Modeling Population Dynamics
    This course is intended as an introduction to the formulation, analysis and application of mathematical models that describe the dynamics of biological populations.
    predator-preycompetitionpopulationgrowthbifrucationtext
    Modeling Scenario
    221

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    291

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    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas for the herbivore consumption rate.
    herbivoreplantphase linesbifurcationoverexploitationsheepgraze
    Free Online Textbook
    210

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    79

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    2016-Rob_deBoer-Population Dynamics  A Graphical Approach
    This book is an introduction into modeling population dynamics in ecology. Because there are several good textbooks on this subject, the book needs a novel ecological niche to justify its existence.
    mathematical modelstabilitycompetitionSIRbifurcationconsumptionpopulation population dynamicsgeneral replicationnonlinear density dependenciesfunctional responsepersistencephase plan analysis
    Potential Scenario
    230

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    57

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    2009-Schaffer-Bronnikova-Controlling malaria
    The present paper reviews potential control strategies from the viewpoint of mathematical epidemiology.
    epidemiologymalariabifurcationmosquitotransgenic mosquitoes
    Potential Scenario
    119

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    53

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    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
    time seriesEvaluation SPLINEgeneleast squaresbifurcation
    Modeling Scenario
    217

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    299

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    5-015-RunnersSynchronize-ModelingScenario
    In this modeling scenario we practice finding and classifying equilibria of a one-variable differential equation. We do this in the context of a phase model which is often a simpler way of studying oscillatory phenomena.
    predatorAutonomous equationsoscillationcoupled oscillatorsynchronyrunnerpreyKuramato model
    Free Online Textbook
    464

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    95

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
    spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions