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    Potential Scenario
    148

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    81

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    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
    computational biologyBioModels Databasebio databaselife science experiments
    Article or Presentation
    169

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    88

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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
    biologydatabasebioinformaticsModelscomputational models
    Potential Scenario
    200

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    73

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    2017-D_Goulet-Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments
    In many chemical and biological applications, systems of differential equations containing unknown parameters are used to explain empirical observations and experimental data. The differential equations are typically nonlinear.
    optimizationBiochemistrysensitivity analysischromatographymass actioncluster analysisconservation lawsdimerizationestrogen receptor protein
    Potential Scenario
    148

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    42

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    2014-Yahdi-EtAl-Modeling and Sensitivity Analysis of the Role of Biodiversity to Control Pest Damage in Agroecosystems
    The paper provides a mathematical framework for cost-effective and environmentally safe strategies to minimize alfalfa damage from pests in alfalfa agroecosystems with optimal biodiversity levels.
    sensitivity analysispredatorsteady statealfalfaShannon diversity indexplant herbivore
    Modeling Scenario
    382

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    497

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    1

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    1-017-DiseaseSpread-ModelingScenario
    Using a grid and m&m candies, we simulate the spread of disease. Students conduct the simulation and collect data to estimate parameters (in several ways) in a differential equation model for the spread of the disease.
    Potential Scenario
    182

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    49

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    2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
    We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
    experimental designsystems biologyAssociation & Data Fittingreaction ratesdecay rates
    Article or Presentation
    299

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    933

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    2020-TeachingModule-SpreadOfCommonColdSimulation
    This simulation is meant to introduce the idea of a differential equation model and investigate the impact of heightened hygiene and decreased interactions on the spread of an infectious disease. The focus of this simulation is on the common cold.
    simulationmoduleinfectious diseasediseasespreadTeaching Modulespread of disease
    Modeling Scenario
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    1-030-EyeModel-ModelingScenario
    We offer a mathematical modeling experience using differential equations to model the volume of an intraocular gas bubble used by ophthalmologists to aid the healing of a surgically repaired region of the retina.
    retinal surgeryAkaike Information CriterionSpanishsum of square errorssurgeryretionaophthalmologyeyeintraocular gas bubble
    Modeling Scenario
    399

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    153

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    1-001s-StochasticMDeathImmigration-ModelingScenario
    We develop a mathematical model of a death and immigration process using m&ms as a stochastic process with the help of probability generating functions (pgf). We start with 50 m&ms in a bag.
    simulationdatalogisticimmigrationstochasticdeathfitting
    Modeling Scenario
    309

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    175

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    0

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    1-071-NewtonWatson-ModelingScenario
    Sherlock Holmes determines the time of death for a body found on a street in London and we need to reproduce his astute analysis
    temperaturedeathNewton's Law of Coolingtime of deathSherlock Holmes
    Modeling Scenario
    298

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    270

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    0

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    1-098-NeuronDetection-ModelingScenario
    Students study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can help understand basics of neural dynamics. The modeling framework is known in mathematical neuroscience as ``integrate-and-fire''...
    biologyneuroscienceneuron physiologyvoltageintegrate and firethrefholscoincidence detectionRC circuit
    Modeling Scenario
    221

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    291

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    1-137-SheepGraze-ModelingScenario
    In this activity, students will apply graphical analysis (such as phase lines) to determine the long-term predictions of a differential equation model for pasture grass using two different formulas for the herbivore consumption rate.
    herbivoreplantphase linesbifurcationoverexploitationsheepgraze
    Modeling Scenario
    309

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    404

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    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study plant-herbivore models.
    ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization
    Modeling Scenario
    523

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    291

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    0

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    1-001a-MMDeathImmigration-Variation-ModelingScenario
    We model exponential death with m&m's as well as death with immigration.
    simulationdatam&mimmigrationdeath
    Modeling Scenario
    290

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    406

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    0

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    1-037-CommonColdSpread-ModelingScenario
    This modeling scenario guides students to simulate and investigate the spread of the common cold in a residence hall. An example floor plan is given, but the reader is encouraged to use a more relevant example.
    diseasecommon coldresidence hall
    Article or Presentation
    506

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    100

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    0

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    2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
    These equations were selected upon the basis of wide-spread recognition of the value of the models.
    biologyequationsten equations
    Potential Scenario
    167

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    40

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    1999-Kowalczyk-Hausknecht-Using DEs To Model Real World Data
    With the increasing availability of easy to use interactive differential equation software, we convinced ourselves to completely redesign the way we teach differential equations.
    circuitTorricelli's LawHooke's LawRC circuitharmonic oscillatorglucoseglucose tolerance test
    Modeling Scenario
    208

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    239

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    5-020-ParacetamolAbsorption-ModelingScenario
    We offer drug absorption data on paracetamol, an analgesic pain reliever, for two different sets of patients, vegetarian and non-vegetarian. Students build a two compartment model for plasma and non-plasma (tissue) compartments of human patients.
    paracetamolanalgesicvegetariannon-vegetarian
    Modeling Scenario
    458

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    183

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    1-046-GoingViral-ModelingScenario
    Students participate in a simulation of the spread of a viral disease in the classroom and model the process with a logistic differential equation. The simulation uses random numbers and the entire class participates.
    simulationmathematical modeldatalogisticrandom number generatorfittingrandom process
    Potential Scenario
    198

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    65

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    1977-Michael_Mackey-Leon_Glass-Oscillation and Chaos in Physiological Control Systems
    First-order nonlinear differential-delay equations describing physiological control systems are studied. The equations display a broad diversity of dynamical behavior including limit cycle oscillation.
    sensitivitychaosparametersRespirationdelayblood cells