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Downloads
Views
Date
Relevance
Article or Presentation
506
views
100
downloads
0
comments
2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author
These equations were selected upon the basis of wide-spread recognition of the value of the models.
biology
equations
ten equations
Potential Scenario
148
views
81
downloads
0
comments
2015-The European Bioinformatics Institute-BioModels Database
BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.
computational biology
BioModels Database
bio database
life science experiments
Potential Scenario
215
views
46
downloads
0
comments
2012-Greer-Palin-Students in Differential Equations and Epidemiology Model a Campus Outbreak of pH1N1
We describe a semester-long collaboration between a mathematics class and a biology class. Students worked together to understand and model the trajectory of the pandemic H1N1, pH1N1, outbreak across campus in fall 2009.
H1N1
pandemic
spread
outbreak
pH1N1
Potential Scenario
174
views
45
downloads
0
comments
2017-Helen-Byrne-Further Mathematics Biology
These studies will be in the context of ecological, biological and biochemical applications.
epidemics
chemotaxis
enzyme-substrate
ion channels
nerve pulses
gene proagation
tumour
Modeling Scenario
545
views
279
downloads
0
comments
1-104A-T-InfectionRisk-ModelingScenario
This project is designed to examine differences between the exponential and logistic growth models in biology and how to apply these models in solving epidemic questions and comparing to actual disease data sets.
regression
infection
COVID19
carrying capacity
logistic equation
exponential model
Potential Scenario
161
views
72
downloads
0
comments
2017-Guy-Bart_Stan-Modelling in Biology
This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.
spring mass
bifurcation
mass action
limit cycles
Free Online Textbook
464
views
95
downloads
0
comments
2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.
spatial
sensitivity analysis
gene regulatory networks
stochastic
bifurcation
metabolic networks
electrophysiology
transduction
rate laws
biochemical reactions
General Resource
201
views
47
downloads
0
comments
2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology
Text Books on Mathematical Modeling in Biology Compiled from the Internet by Michael Knorrenschild,
biology
Mathematical Biology
textbook
text
Potential Scenario
119
views
53
downloads
0
comments
2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters particularly suited to situations where noise levels are...
time series
Evaluation SPLINE
gene
least squares
bifurcation
Potential Scenario
279
views
98
downloads
0
comments
2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
simulation
NetLogo
predator-prey
agent-based
wolf
fox
Potential Scenario
277
views
54
downloads
0
comments
2006-Juska-Gedminiene-Ivanec-Growth of Microbial Populations-Mathematical Modeling-Laboratory Exercises-Model-Based Data Analysis
The aim is to teach the students to use a fresh approach to the problems they are familiar with, to come up with an articulate verbal model after a mental effort, to express it in rigorous mathematical terms, to solve (with the aid of computers).
population growth rate
logistic equation
Verhulst equation
generation time
lag time
Potential Scenario
179
views
75
downloads
0
comments
2007-I-Liang_Chern-Mathematical Modeling and Differential Equations
In this course, I will mainly focus on, but not limited to, two important classes of mathematical models by ordinary differential equations: • population dynamics in biology • dynamics in classical mechanics.
population dynamics
ecology
dynamics
classical mechanics
chemical reaction
Potential Scenario
159
views
71
downloads
0
comments
1935 GFGause Article Predator Prey Oscillations
N/A
Lotka-Volterra
predator
paramecium
prey
cycle
oscillate
Potential Scenario
190
views
45
downloads
0
comments
2013-Alicia_Caldwell-Students Rise to the Challenge of Modeling Yeast Growth Despite Sour Hiccups from Imperfect Data
This paper describes a lab in which students in an Applied Mathematics in Biology course observe the growth of Saccharomyces cerevisiae, a yeast strain, in differing sugar concentrations for use in learning modeling.
Saccharomyces cerevisiae
logistic
yeast
death
growth
sugar
alcohol
Potential Scenario
136
views
42
downloads
0
comments
1998-K_H_Louie_Clark-P_C_D_Newton-Analysis of differential equation models in biology-clover meristem populations
A simple differential equation model (dynamical system) for clover, based on meristem numbers, is outlined and analysed mathematically.
sensitivity analysis
stability analysis
steady states
growing points
buds
meristems
Article or Presentation
169
views
88
downloads
0
comments
2015-European_Bioinformatics_Institute-Bio-Models-Database
Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are provided in the Public Domain.
biology
database
bioinformatics
Models
computational models
Potential Scenario
182
views
49
downloads
0
comments
2012-Transtrum-Qiu-Optimal experiment selection for parameter estimation in biological differential equation models
We explore the question to what extent parameters can be efficiently estimated by appropriate experimental selection.
experimental design
systems biology
Association & Data Fitting
reaction rates
decay rates
Potential Scenario
133
views
51
downloads
0
comments
2011-GA_Koch-Noble-Drugs in the Classroom Using Pharmacokinetics to Introduce Biomathematical Modeling
By beginning with simple model involving the half-life of a drug, students take advantage of their mathematical abilities to explore the biology.
Biomathematics
pharmacokinetics
Potential Scenario
294
views
47
downloads
0
comments
2018-Robert_Phair-Differential_equation_methods_for_simulation_of_GFP_kinetics_in_non–steady_state_experiments
Here, we derive new tracer kinetic analytical methods for non–steady state biological systems by constructing mechanistic nonlinear differential equation models of the underlying cell biological processes.
protein quality control
kinetics
Cells
steady state
chemical kinetics
fluouresence
photoactivation
inytracellular
Article or Presentation
129
views
33
downloads
0
comments
2002-Patrick_Nelson-Alan_Perelson-Mathematical_analysis_of_delay_differential _equation_models_of_HIV-1_infection
Models of HIV-1 infection that include intracellular delays are more accurate representations of the biology and change the estimated values of kinetic parameters when compared to models without delays.
delay
HIV-1
T cells
combination antiviral therapy
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