Needleman - Wunsch Algorithm Exercise
out of 5 stars
22 Apr 2020 | Contributor(s): Michael Sierk, Sam S Donovan, Neal Grandgenett, Bill Morgan, Mark A. Pauley, Elizabeth F Ryder | doi:10.25334/H7KQ-F202
This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.
The QUBES Resource System: Integrating open educational practices into diverse education reform communities
28 Oct 2019 | Contributor(s): Sam S Donovan, Drew LaMar, Hayley Orndorf, Sarah Prescott | doi:10.25334/X9F5-7C81
Presentation on the QUBES Resource System given at the 16th Annual Open Education Conference
Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes
27 Sep 2019 | Contributor(s): Sam S Donovan | doi:10.25334/ESGF-TM72
This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).
Summer 2019 Biobytes
14 Aug 2019 | Contributor(s): Sam S Donovan | doi:10.25334/EQDC-0T97
This series includes the four Biobytes that were piloted at the 2019 BioQUEST / QUBES Summer Workshop titled, “Evolution of Data in the Classroom: From Data to Data Science”.
Biobyte 4 - The role of data science principles and practices in undergraduate biology
15 Aug 2019 | Contributor(s): Sam S Donovan | doi:10.25334/B3K4-7G59
This short activity was an effort to launch a community conversation around the interface of data science principles and practices and undergraduate biology education. A variety of resources, communities, and projects are shared.
Biobyte 3 - Lab reports as reproducible research
14 Aug 2019 | Contributor(s): Sam S Donovan, Drew LaMar | doi:10.25334/9MMK-JH89
This short activity introduces a discussion of reproducibility in scientific research and ways that we might address these ideas with undergraduates. There is an opportunity to use a prototype version of Serenity to explore BIRDD data.
Biobyte 2 - Exploratory data analysis
14 Aug 2019 | Contributor(s): Sam S Donovan | doi:10.25334/9W94-0F23
This short activity can be used to introduce the concept of exploratory data analysis and get participants to think about how this data science strategy is complementary to having students interpret graphs.
Biobyte 1 - Where are we in the data science landscape?
06 Aug 2019 | Contributor(s): Sam S Donovan | doi:10.25334/03VE-VK77
This short activity can be used to introduce the NAS Data Science For Undergraduates report's definition of data acumen and engage participants in a self assessment of how they connect with those 10 data science concepts.
BioQUEST / QUBES Summer Workshop - Code of Conduct
01 Aug 2019 | Contributor(s): Kristin Jenkins, Sam S Donovan, Adam Fagen, Drew LaMar, Hayley Orndorf, Jim Smith, Margaret Waterman | doi:10.25334/473N-CN03
We are using this project to publish and version our meeting code of conduct. Our goal is to engage the conference community in the discussion of the code of conduct to raise awareness about it.
Faculty Mentoring Networks: Community Professional Development for the Digital Age
17 Jul 2019 | Contributor(s): Deborah Rook, Sam S Donovan, Carrie Diaz Eaton, Kristin Jenkins, Drew LaMar, Jeremy M Wojdak, Nicole Chodkowski, Elia Crisucci, Adam Fagen, Gabriela Hamerlinck, Elizabeth Hamman, Hayley Orndorf | doi:10.25334/EEEZ-R150
Poster for BioQUEST Summer Workshop 2019 What is an FMN? What is it like to be in one? What are the benefits?
Measuring Success for Collections: Educational Products and Outcomes
07 Jun 2019 | Contributor(s): Anna Monfils, Molly Phillips, Libby Ellwood, Debra Linton, Lisa White, Natalie Douglas, Shari Ellis, Sam S Donovan | doi:10.25334/Q4HT89
Presentation at the 34th Annual meeting of the Society for the Preservation of Natural History Collections
NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
21 May 2019 | Contributor(s): Michael Sierk, Sam S Donovan, Bill Morgan, Hayley Orndorf, Mark A. Pauley, Sabrina Robertson, Elizabeth F Ryder, William Tapprich | doi:10.25334/Q4QX7T
Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference
15 May 2019 | Contributor(s): Michael Sierk, Sam S Donovan, Bill Morgan, Hayley Orndorf, Mark A. Pauley, Sabrina Robertson, Elizabeth F Ryder, William Tapprich | doi:10.25334/Q42F3K
QUBES: An education gateway for professional development, OER sharing, and project support
23 Apr 2019 | Contributor(s): Sam S Donovan, Kristin Jenkins, Drew LaMar, Jeremy M Wojdak | doi:10.25334/Q4CF20
Poster about QUBES as an education gateway presented at the 2019 ASCN Transforming Institutions
29 Mar 2019 | Contributor(s): Michael Sierk, Sam S Donovan, Bill Morgan, Hayley Orndorf, Mark A. Pauley, Sabrina Robertson, Elizabeth F Ryder, William Tapprich | doi:10.25334/Q4XF1K
Presentation given at GLBIO 2019 on NIBLSE Incubators
Changing Faculty Practice: Promoting the Scholarship of Teaching with Faculty Mentoring Networks
27 Mar 2019 | Contributor(s): Jeremy M Wojdak, Sam S Donovan, Carrie Diaz Eaton, Kristin Jenkins, Drew LaMar | doi:10.25334/Q43445
Poster presented at Transforming STEM Higher Education: Confirming the Authority of Evidence, AAC&U 2018
19 Mar 2019 | Contributor(s): Sam S Donovan, Hayley Orndorf, Drew LaMar | doi:10.25334/Q4CM9C
Poster about QUBES as an education gateway presented at the 2019 Biology Leadership Community meeting
Getting students to reason with data: QUBES tools and teaching resources built for introductory biology
21 Feb 2019 | Contributor(s): Sam S Donovan | doi:10.25334/Q49X5B
Workshop presented at the 2019 Biology Learning Community Conference
Plasmodium Problem Space
07 Jan 2019 | Contributor(s): Sam S Donovan | doi:10.25334/Q4N43R
This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.
Documenting teaching scholarship among undergraduate biology educators using OER
11 Oct 2018 | Contributor(s): Ahrash Bissell, Lauren Collister, Sam S Donovan, Drew LaMar, Hayley Orndorf | doi:10.25334/Q44T5R
Poster on the use, adaptation, and reuse of Open Educational Resources within the QUBES community at OpenEd 2018
QUBES-ESA partnership uses online Faculty Mentoring Networks to prepare faculty for teaching quantitative biology to undergraduates
13 Aug 2018 | Contributor(s): Nicole Chodkowski, Gabriela Hamerlinck, R Deborah Overath, Teresa Mourad, Kristin Jenkins, Sam S Donovan, Arietta Fleming-Davies, Jeremy M Wojdak | doi:10.25334/Q4G71G
Poster on Faculty Mentoring Networks presented at ESA 2018
13 Aug 2018 | Contributor(s): Ahrash Bissell, Lauren Collister, Sam S Donovan, Drew LaMar, Hayley Orndorf | doi:10.25334/Q4070R
Fostering and Sustaining Interdisciplinary Faculty Communities Around Undergraduate Teaching: Insights from the QUBES Project
28 Aug 2018 | Contributor(s): Sam S Donovan | doi:10.25334/Q4ZX4V
Talk given as a part of the Symposium - Communities of Practice for Math Modeling Education at the SIAM 2018 Conference
QUBES: Building a community to promote undergraduate quantitative biology education
13 Jul 2018 | Contributor(s): Sam S Donovan, Carrie Diaz Eaton, Kristin Jenkins, Drew LaMar, Jeremy M Wojdak, Nicole Chodkowski, Gabriela Hamerlinck, Deborah Rook, Elia Crisucci, Hayley Orndorf | doi:10.25334/Q41D8T
Poster on the QUBES project presented at the 2018 QUBES/BioQUEST Summer Workshop
Serenity now! Keep calm and do science with real data in the classroom
20 Jun 2018 | Contributor(s): Drew LaMar, Sam S Donovan, Hayley Orndorf | doi:10.25334/Q4Z425
Session on using real data in the classroom with Serenity, a platform-independent browser-based interface to data science tools for the classroom.