1. A BioGraphy of Life: How Graph Theory Makes Mathematics Recognizable, Relevant, and Research-Rich in Biology Education

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   11 Oct 2016 | Teaching & Reference Material | Contributor(s): John R Jungck

   This resource has been updated - find the current version here: https://qubeshub.org/publications/241Biologists use graphs extensively in ecology, evolution, genetics, developmental biology, and biochemistry: phylogenetic trees, food webs, pedigrees, genetic networks, metabolic pathways,...

2. Luria-Delbruck

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   14 Sep 2015 | Teaching & Reference Material | Contributor(s): Tony Weisstein, John R Jungck, Doug Green

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/777These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses. Under the hypothesis of acquired immunity, mutation...

3. EvolSeq

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   14 Sep 2015 | Teaching & Reference Material | Contributor(s): Tony Weisstein, John R Jungck

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/776This worksheet simulates the molecular evolution of DNA sequences. The program begins with a single (random) sequence, then follows that sequence through time as it...

4. 3D FractaL-Tree

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   24 Aug 2015 | Teaching & Reference Material | Contributor(s): John R Jungck, Jennifer A Spangenberg, Noppadon Khiripet, Rawin Viruchpinta, Jutarat Maneewattanapluk

   This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/775Artistid Lindemayer (1975, 1989, 1990) invented a mathematics based on graph grammar rewriting systems to describe iteratively branching structures; these were named in...

5. Ka-me: Voronoi Image Analyzer 1.0

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   15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

   Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

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   2007-John_Jungck-Ten_Equations_that_Changed_Biology-Mathematics_in_Problem-Solving_Biology_Curricula The author

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   15 Mar 2023 | Contributor(s): John R Jungck | doi:10.25334/KH7Z-RA09

   These equations were selected upon the basis of wide-spread recognition of the value of the models.

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   Supplemental Materials for Beagle Investigations Return with Darwinian Data Manuscript

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   03 Oct 2022 | Contributor(s): John R Jungck, Sam S Donovan | doi:10.25334/2XT4-NX84

   Supplement 1 contains an example laboratory exercise for introducing the BIRDD resources. Supplement 2 contains a list of web accessible data resources to supplement the existing BIRDD resources.

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   Wenxiang 3.0

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   04 Mar 2022 | Contributor(s): John R Jungck, Metehan Cebeci | doi:10.25334/X810-XN51

   Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding three major features: (1) individual amino acid residues can be colored according to their...

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   Wenxiang 3.0

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   01 Mar 2022 | Contributor(s): John R Jungck, Metehan Cebeci | doi:10.25334/KXZ4-0M74

   Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage over helical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding three major features: (1) individual amino acid residues can be colored according to their...

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   Table Top Orientation to the Galapagos Islands and Finches

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   03 Oct 2022 | Contributor(s): Sam S Donovan, John R Jungck | doi:10.25334/RSER-7T81

   The Galapagos Finches are one of the most widely recognized examples of evolutionary biology research. This paper and pencil activity provides access to a variety of data resources that can be used to think about the patterns and causal relationships underlying the distribution and other...

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