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RNAseq data analysis using Galaxy

By Matthew Escobar

California State University - San Marcos

This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

Listed in Teaching Materials | resource by group NIBLSE Incubator: RNAseq data analysis using Galaxy

Version 1.0 - published on 03 Jul 2017 doi:10.25334/Q4R07T - cite this Last public release: 3.0

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms



This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.

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NIBLSE Incubator: RNAseq data analysis using Galaxy

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