RNAseq data analysis using Galaxy
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
Listed in Teaching Materials | resource by group NIBLSE Incubator: RNAseq data analysis using Galaxy
Version 2.0 - published on 01 Aug 2017 doi:10.25334/Q4K379 - cite this Last public release: 3.0
Licensed under CC Attribution-ShareAlike 4.0 International according to these terms
Description
This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.
Content List
Bundle(ZIP | 15 MB)
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Cite this work
Researchers should cite this work as follows:
- Matthew Escobar (2017). RNAseq data analysis using Galaxy. NIBLSE Incubator: RNAseq data analysis using Galaxy, (Version 2.0). QUBES Educational Resources. doi:10.25334/Q4K379
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Notes
Version 2 includes updates from the author based on NIBLSE RRC recommendations.
NIBLSE Incubator: RNAseq data analysis using Galaxy
This publication belongs to the NIBLSE Incubator: RNAseq data analysis using Galaxy group.
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