Support

Support Options

  • Knowledge Base

    Find information on common questions and issues.

  • Support Messages

    Check on the status of your correspondences with members of the QUBES team.

Contact Us

About you
About the problem
Close
You are here: Home / Resources / Teaching Materials / RNAseq data analysis using Galaxy / About

RNAseq data analysis using Galaxy

By Matthew Escobar

California State University - San Marcos

This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

Listed in Teaching Materials | resource by group NIBLSE Incubator: RNAseq data analysis using Galaxy

Version 2.0 - published on 01 Aug 2017 doi:10.25334/Q4K379 - cite this Last public release: 3.0

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

View most current public release [3.0] for latest usage information.

282 total view(s), 39 download(s)

Description

This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.

Content List

Cite this work

Researchers should cite this work as follows:

Tags

  1. Activity Length
  2. Advanced
  3. Arabidopsis
  4. Audience Level
  5. C1. Role of bioinformatics
  6. C2. Computational concepts
  7. C3. Statistical concepts
  8. C5. Data retrieval
  9. Extended Project
  10. Galaxy
  11. gene expression
  12. Instructional Setting
  13. Lab
  14. mapping
  15. NIBLSE
  16. RNAseq
  17. Teaching material
  18. Undergraduate
  19. workflow

Notes

Version 2 includes updates from the author based on NIBLSE RRC recommendations. 

NIBLSE Incubator: RNAseq data analysis using Galaxy

NIBLSE Incubator: RNAseq data analysis using Galaxy group image

When watching a resource, you will be notified when a new version is released.

Adapt 0
Close

Home

Search