This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
Listed in Teaching Materials | resource by group NIBLSE Incubator: RNAseq data analysis using Galaxy
This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.
Cite this work
Researchers should cite this work as follows:
- Matthew Escobar (2017). RNAseq data analysis using Galaxy. NIBLSE Incubator: RNAseq data analysis using Galaxy, (Version 2.0). QUBES Educational Resources. doi:10.25334/Q4K379
Version 2 includes updates from the author based on NIBLSE RRC recommendations.
NIBLSE Incubator: RNAseq data analysis using Galaxy
This publication belongs to the NIBLSE Incubator: RNAseq data analysis using Galaxy group.
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