Support

DNA Subway supports several classroom-friendly bioinformatics workflows including: predict and annotate genes in up to 150kb of DNA (Red Line), identify homologs in sequenced genomes (Yellow Line), identify species using DNA barcodes and phylogenetic trees (Blue Line), and examine RNA-Seq datasets for differential transcript abundance (Green Line). 

There are several NIBLSE reviewed resources associated with DNA Subway

• Using DNA Subway to Analyze Sequence Relationships

• Using DNA Subway to Analyze Sequence Relationships (v2.0)

  This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

• License terms

Researchers should cite this work as follows:

• Williams, J. (2017). DNA Subway Learning Resources. (Version 2.0). QUBES Educational Resources. doi:10.25334/Q45D5X

  BibTex | EndNote

1. Activity Length
2. Advanced
3. Audience Level
4. bioinformatics
5. BLAST
6. C1. Role of bioinformatics
7. C2. Computational concepts
8. C4. Bioinformatics tools
9. C5. Data retrieval
10. C8. Data types
11. DNA Barcoding
12. DNA sequence
13. DNA Subway
14. Extended Project
15. High School
16. Instructional Setting
17. introductory
18. Lab
19. multiple sequence alignment
20. NIBLSE
21. phylogenetics
22. Teaching material
23. Undergraduate