A laboratory module for an upper-level undergraduate biology course in which students will be able to carry out simple tasks using the Unix command-line environment.
Listed in Teaching Materials | resource by group NIBLSE Incubator: Introduction to UNIX command line
This laboratory module leads undergraduate biology students in learning how to operate in a command-line environment. It is derived from a workshop given by the Institute for Quantitative and Computational Biosciences at UCLA, primarily to graduate students and research scientists with the need to learn how to process sequence data in a Unix environment. The materials from that three-day workshop are available here: https://github.com/QCB-Collaboratory/W1.UNIX.command.line/wiki. These materials can be used as background for the Instructor and/or students, or as an extension of this exercise.
Cite this work
Researchers should cite this work as follows:
- Serghei Mangul, Butela, K., Sierk, M., Stefan, L. (2020). Introduction to UNIX command line. NIBLSE Incubator: Introduction to UNIX command line, (Version 2.0). QUBES Educational Resources. doi:10.25334/H7TG-G648
This version includes extensive teaching notes, clarified learning outcomes, and more student-centered, inquiry focused pedagogical strategies. The material was also adapted to fit in one three-hour laboratory period.
NIBLSE Incubator: Introduction to UNIX command line
This publication belongs to the NIBLSE Incubator: Introduction to UNIX command line group.
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