You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

    3696

    views

    406

    downloads

    0

    comments

    0

    adaptations

    A 360˚ View of COVID-19
    In March 2020, institutions underwent a massive transition to distance learning as a result of the COVID-19 pandemic. With so little time to devise new materials to maximize learning in the new...

    Keywords: geneticsImmunologyBiochemistrybioinformaticsmolecular evolutionpublic healthvirusCOVID19

    3567

    views

    1691

    downloads

    0

    comments

    0

    adaptations

    Authentic Ecological Inquiries Using BearCam Archives
    Learning through authentic scientific inquiries is essential for understanding the nature and process of science and for developing critical thinking and communication skills. It is logistically...

    Keywords: behaviorinterspecific interactionsPeer reviewauthentic inquiryintra-specific interactions

    1712

    views

    308

    downloads

    0

    comments

    0

    adaptations

    Three Research-Based Quantitative Reasoning Modules for Introductory Organismal Biology Laboratories
    We have designed three laboratory modules for an introductory organismal biology course with an emphasis on quantitative reasoning and data analysis skills. Module 1 tests for dimorphism in...

    Keywords: allometryplantsAnatomytranspirationdimorphisminvertebrate biologyarthropodsplatyhelminths

    3608

    views

    181

    downloads

    0

    comments

    0

    adaptations

    Investigating Evidence for Climate Change (Project EDDIE) with CO2 and 13CO2 data: adapted for R
    This is an adaptation to work in R of Investigating Evidence for Climate Change (Project) by Hage, M. 2020. Students will investigate geologic and modern evidence for global temperature and...

    Keywords: climate changeGlobal Temperature Changeco2ice core datastable isotopesR software

    1033

    views

    1434

    downloads

    0

    comments

    0

    adaptations

    Investigating Evidence for Climate Change (Project EDDIE)
    This multi-part activity allows students to discover the relationships between CO2 and temperature and how these variables have changed over time using real-world data.

    Keywords: Excelclimate changeGlobal Temperature Changeco2ice core data

    1532

    views

    889

    downloads

    0

    comments

    1

    adaptations

    Predicting and classifying effects of insertion and deletion mutations on protein coding regions
    Mutations in genes can affect the encoded proteins in multiple ways, and some of these effects are counterintuitive. As for any other knowledge, students must create their own deep understanding of...

    Keywords: mutationcentral dogmatranslationframeshift

    3236

    views

    607

    downloads

    0

    comments

    0

    adaptations

    Take 4DEE outside: Using campus and local resources to photograph ecological concepts
    In my introductory courses in environmental science and ecology, students work on a three-part project throughout the 16-week semester (called “Finding Ecology Where You Look”) to focus on making...

    Keywords: ecologyenvironmental scienceconcept inventoryPhotography4DEE Framework

    95

    views

    22

    downloads

    0

    comments

    0

    adaptations

    Defining Life: Exploring Creativity, Scientific Discovery, and Biology Core Concepts in a Disciplinary First-Year Seminar
    This unit, Defining Life, engages students in thinking like scientists, applying creativity to science, and learning biology core concepts as they explore the defining characteristics of life. This...

    Keywords: Evolutionbiologycellprocess of science

    1094

    views

    57

    downloads

    0

    comments

    0

    adaptations

    TEE Network -Transforming Ecology Education to Four Dimensional Network (RCN-UBE Introduction)
    The TEE network explores the unique role of a disciplinary society in encouraging education innovation and motivating a network of core volunteer leaders and distributed faculty in multiple...

    Keywords: RCN-UBE Introduction

    279

    views

    86

    downloads

    0

    comments

    0

    adaptations

    Using the Project Eddie Module “Paleoclimate and Ocean Biogeochemistry” in the Upper-Division Undergraduate Course “Climate and the Earth System”
    Students explore and compare datasets on modern nutrient concentrations and productivity, as well as paleo datasets to try to answer the question: “How does primary productivity influence global...

    Keywords: BiogeochemistryPaleoclimatepleoceanographygeochemistry

    437

    views

    305

    downloads

    0

    comments

    0

    adaptations

    Concept mapping exercise for ecological news story and peer feedback
    This activity is designed for small groups to work together in class to create a concept map based upon an ecological news story. Any short news story can be selected. One is provided here, along...

    Keywords: ecologysystems thinkingconcept mappingpeer feedbackin-class exercise

    315

    views

    81

    downloads

    0

    comments

    0

    adaptations

    Species Conservation Management Plan Report and Class Exercise
    In this project, students work in pairs to become an expert in their assigned IUCN Red List endangered species. They are charged to create a well-researched, written conservation management plan....

    Keywords: ecologyconservation4DEE Frameworkmanagement planspeed dating exercise

    372

    views

    81

    downloads

    0

    comments

    0

    adaptations

    River and Tree health of the Truckee River Basin with Noelle Patterson
    Today we are highlighting our talk with Ph.D. student Noelle Patterson discussing watersheds, the history of the Truckee River Basin, and the health of Cottonwoods in the region.

    Keywords: ecologyteachinghydrology

    430

    views

    131

    downloads

    0

    comments

    0

    adaptations

    BETTSI - Basic Evolutionary Tree-Thinking Skills Instrument
    A short, multiple choice diagnostic designed to provide instructors with a quick check on students’ understanding of and ability to read and interpret phylogenies.

    Keywords: EvolutionphylogeneticsTree thinking

    1272

    views

    717

    downloads

    1

    comments

    0

    adaptations

    Backyard Beetles + Pollinators for a non-lab course on biodiversity conservation
    Backyard Beetles + Pollinators is a project to observe and evaluate plant-pollinator networks. This adaptation modifies the (adapted) modules for a non-lab course on conservation, conducted during...

    Keywords: NEONNational Ecological Observatory Network

    986

    views

    939

    downloads

    0

    comments

    0

    adaptations

    Adaptation of Plants in the Human-Altered Environment (PHAE) for a non-lab course on biodiversity conservation
    PHAE is a project to compare effects of landscape alteration intensities on plant biomass and diversity. This adaptation modifies the (adapted) modules for a non-lab course on conservation,...

    Keywords: erenNEONdiversitybiomass4DEE Frameworkecosystemsocioeconomic effects

    1087

    views

    1121

    downloads

    0

    comments

    0

    adaptations

    Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource
    Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...

    Keywords: bioinformaticsNIBLSELife Science

    1397

    views

    212

    downloads

    2

    comments

    0

    adaptations

    Making bioinformatics tools classroom-friendly
    Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: bioinformaticsJupyterJupyter notebookBLASTCyVerseRNA sequencing

    1186

    views

    241

    downloads

    0

    comments

    0

    adaptations

    Data Visualization
    This is an introduction to the idea of data visualization and the importance of presenting data for understanding.

    Keywords: data in the classroomdata visualization

    2029

    views

    664

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search