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    Lesson I - Introduction to Genome Solver
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    BioNumbers: The Database of Useful Biological Numbers
    A database of biological numbers that you can search and browse.
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    Functional trait-based restoration. Can hybrid restoration enhance invasion resistance and ecosystem services?
    A hybrid restoration experiment in Hilo, Hawaiʻi, in an area of high biocultural conservation value, that address the ecological and philosophical issues involved in conducting restoration with a...

    Keywords: Invasive SpeciesagroforestryHawaii CountyRestoration Ecologyplant functional traitstropical forest

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    2016-I-Liang_Chern-Mathematical Modeling_and_Ordinary_Differential_Equations
    We let the author's Table of Contents speak for itself.

    Keywords: differential equationsmodelingtextbook

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    CourseSource 2.0: Finding high quality field-tested OERs, publishing evidence-based teaching activities, and promoting community collaborations.
    Workshop materials related to the CourseSource platform. Presented at the the 2021 BIOME Institute.

    Keywords: undergraduate biology educationCourseSourceopen educational resourceevidence-based teaching2021 BIOME

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    A Phenology-focused CURE using Herbarium Specimen Data
    10-week course-based undergraduate research experience in which students conduct novel research on the effects of climate on phenological events (e.g., flowering) of a plant species using publicly...

    Keywords: phenologyScientific ProcessCURE

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    Parabolas Everywhere?
    In this lesson students will use mathematical models to describe real-world objects and to gain better understanding of quadratic functions.
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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

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    Peek into Plant Diversity using Herbarium Specimens (Online!)
    This exercise introduces herbarium specimens and how they are used for research. Students contribute to specimen "digitization" using the citizen science platform Notes from Nature, and they work...
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    The Polar Bear of the Salt Marsh? Warming Tolerance Limits of Local Species
    National Center for Case Study Teaching in Science- In the adaptation exercise, students explore connections between saltmarsh sparrow declines and declining populations of local species that live...

    Keywords: Coastal wetlandsConnecticutmanagementnortheastsea-level risesalt marsh

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    Linking Intermediate Disturbance Hypothesis to Traditional Ecological Knowledge and Conservation
    Traditional Ecological Knowledge is based on deep understanding of systems from observations made over hundreds to thousands of years. This resource connects Traditional Ecological Knowledge to...

    Keywords: climate changeenvironmental justiceintermediate disturbance hypothesisTraditional ecological knowledge

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    Engaging Undergraduates in Mechanisms of Tubular Reabsorption and Secretion in the Mammalian Kidney
    If students fail to see the connections among physiological systems, they can become overwhelmed with the amount of information they need to learn. Some students have particular difficulty with the...

    Keywords: OsmosisActive transportMass flowRenal reabsorptionRenal secretionTransport across membranes

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    Genome Solver - A bioinformatics pipeline for community science
    The Genome Solver was an NSF-funded project developed as a way to train undergraduate life science faculty in basic web-based tools for bioinformatics. As part of the project we developed a one-day...

    Keywords: phylogeneticsbacteriophagebacteriaHorizontal Gene transferGenome Analysis

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    Maria vs Malaria - AR Adaptation
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria. Students will be able to view selected molecular views from the...

    Keywords: bioinformaticsAugmented RealityLarge class sizemolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

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    2012-Nokkaew-EtAl-Estimation of Algae Growth Model Parameters by a Double Layer Genetic Algorithm
    This paper presents a double layer genetic algorithm (DLGA) to improve performance of the information-constrained parameter estimations.

    Keywords: optimizationalgae growthgenetic algorithmssimulated dataconvergence of parameters

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    2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
    A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The

    Keywords: glucose tolerance testsum of squared residualsmultiple shooting methodcost function

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    2006-Matt_MacWilliams-Developing ODEs to Describe the Motion of a Paper Helicopter
    This paper attempts to create a model that describes the motion of a paper helicopter using engineering, physical and statistical knowledge.

    Keywords: experimental designhelicopter

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    Exploring the bottom of the ocean and TITANIC wreckage with David Gallo
    In honor of @WorldOceansDay , we had the privilege of talking with legendary oceanographer David Gallo for our latest Lunch With A Scientist episode. He shares astonishing footage of deep-sea...

    Keywords: Oceanographyocean exploration

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    Sequence Similarity: Introducing Biological Databases to Community College Biology Students
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogramZika virus

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    Multiple choice quiz questions for biostatistics
    A set of 157 multiple choice quiz questions for biostatistics courses, organized and searchable by 18 concepts/skills.

    Keywords: quizbiostatistics - general

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