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  1. Aging and Circular RNAs

    Aging and Circular RNAs

    2018-04-13 18:54:35 | Teaching Materials | Contributor(s): Pedro Miura | doi:10.25334/Q4T999

    A science FIT seminar presented to incoming freshmen at UNR

  2. Screen Casts for Foundations of Bioinformatics at UCSD

    Screen Casts for Foundations of Bioinformatics at UCSD

    2018-04-13 18:36:04 | Teaching Materials | Contributor(s): Barry Grant | doi:10.25334/Q4B98K

    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

  3. Using Jetstream for Bioinformatics

    Using Jetstream for Bioinformatics

    2018-04-13 15:48:59 | Teaching Materials | Contributor(s): Barry Grant | doi:10.25334/Q4KT2N

    A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).

  4. How do we do Bioinformatics?

    How do we do Bioinformatics?

    2018-04-13 15:41:56 | Teaching Materials | Contributor(s): Barry Grant | doi:10.25334/Q4V97V

    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

  5. What is Bioinformatics?

    What is Bioinformatics?

    2018-04-13 15:34:19 | Teaching Materials | Contributor(s): Barry Grant | doi:10.25334/Q43T29

    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

  6. Foundations of Bioinformatics (BGGN-213)

    Foundations of Bioinformatics (BGGN-213)

    2018-04-13 15:27:46 | Teaching Materials | Contributor(s): Barry Grant | doi:10.25334/Q4C98W

    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

  7. Video Tutorials for Computational Genomics

    Video Tutorials for Computational Genomics

    2018-04-12 15:21:40 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4X98V

    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.

  8. How to Use BLASTP NCBI

    How to Use BLASTP NCBI

    2018-04-12 00:40:07 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4G68S

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

  9. ProteinPhysiochemistry

    ProteinPhysiochemistry

    2018-04-12 00:33:50 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4QQ4M

    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

  10. LEAGSEA

    LEAGSEA

    2018-04-12 00:25:40 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4068F

    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

  11. Using Phyre2

    Using Phyre2

    2018-04-12 00:17:26 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q47Q48

    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

  12. NCBI Overview

    NCBI Overview

    2018-04-12 00:00:17 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4H683

    An overview of some of the databases within NCBI and how to get FASTA sequences.

  13. UniProt

    UniProt

    2018-04-10 20:38:56 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4RQ59

    Brief description of UniProt and its databases and features

  14. GSEAtheory

    GSEAtheory

    2018-04-10 20:31:51 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q41694

    Brief introduction to how gene set enrichment analysis works.

  15. Simple Heat Maps with Morpheus

    Simple Heat Maps with Morpheus

    2018-04-10 19:02:19 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q48Q4K

    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

  16. What is bioinformatics?

    What is bioinformatics?

    2018-04-10 18:56:31 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4J69S

    Short description of what bioinformatics is, it's potential applications, and what it is not.

  17. How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office

    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office

    2018-04-10 18:51:28 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4SQ5M

    YouTube video on using statistical notation in Microsoft Word.

  18. Fostering and sustaining interdisciplinary faculty communities around undergraduate teaching: Insights from the QUBES project

    Fostering and sustaining interdisciplinary faculty communities around undergraduate teaching: Insights from the QUBES project

    2018-04-05 19:04:24 | Teaching Materials | Contributor(s): Sam S Donovan | doi:10.25334/Q4K68Q

    Presentation part of a minisymposium at the SIAM Applied Mathematics Education (ED18) conference, "Communities of Practice for Math Modeling Education"

  19. Investigating the footprint of climate change on phenology and ecological interactions in north-central North America

    Investigating the footprint of climate change on phenology and ecological interactions in north-central North America

    2018-04-05 18:31:00 | Teaching Materials | Contributor(s): James Eric Biardi | doi:10.25334/Q4TM4H

    The module was used in lab following lecture material on pairwise interactions in ecology (emphasizing consumption, competition, mutualism), and parallel to community ecology (emphasizing food web structure, succession, resistance and resilience).

  20. Global Temperature Change in the 21st Century

    Global Temperature Change in the 21st Century

    2018-04-05 18:05:24 | Teaching Materials | Contributor(s): James Biardi | doi:10.25334/Q4340N

    This module was used as an introduction to the science of climate change, with the goal of detecting trends in temperature change providing motivation for later course material on climate adaptation and mitigation.