Resources: Compare
#165, v1.0
#599, v1.0.0
Title
| Old Version | New Version | ||
|---|---|---|---|
| 1 | Using DNA Subway to Analyze Sequence Relationships | 1 | Intro to DNA Subway Blue Line |
Authors
| Old Version | New Version | ||
|---|---|---|---|
| 1 | Oliver Hyman (The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University ) | ||
| 2 | Andrea Pesce (James Madison University) | ||
| 3 | Emily Lescak () | ||
| 4 | William Tapprich (University of Nebraska-Omaha) | ||
| 5 | Jason Williams (DNA Learning Center) | ||
| 6 | Elizabeth Ryder (Worcester Polytechnic Institute) | ||
| 7 | Ray A Enke (The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University ) | ||
| 8 | Sam S Donovan (University of Pittsburgh) | ||
| 1 | Hayley Orndorf (University of Pittsburgh) | 9 | Hayley Orndorf (University of Pittsburgh) |
| 2 | Jason Williams (DNA Learning Center) | 10 | Hayley Orndorf () |
| 11 | Elizabeth Doyle (James Madison University) | ||
Description
| Old Version | New Version | ||
|---|---|---|---|
| 1 | <p> | 1 | <p>Materials include:</p> |
| 2 | 2 | ||
| 3 | <p>This activity is appropriate for a broad audience with an introductory level experience with bioinformatics. The activity is designed for a computer lab setting with a class size between 10 and 50 students. </p> | 3 | <ol> |
| 4 | <li>A lab activity (with answers included) introducing DNA Barcoding, DNA Subway Blue Line and a short Blue Line activity (HYMAN et al. 2016 DNA Subway Blue Line Lab KEY.docx)</li> | ||
| 5 | <li>A electronic lab notebook to help students record the data they generate in Blue Line (HYMAN et al. DNA subway lab notebook entry.docx)</li> | ||
| 6 | <li>Two slide decks that help guide students through DNA Subway Blue Line. The first slide deck is a self-guided tour for students to use on their own (HYMAN et al. DNA Subway_Independent Blue Line Practice.pptx). The second slide deck is designed for an instructor led tour in class (HYMAN et al. DNA Subway_Instructor led Blue Line Practice.pptx). </li> | ||
| 7 | <li>A slide deck designed to help instructors deal with common issues that can arise during blue line analyses (HYMAN et al. worked example slides for instructors.pptx).</li> | ||
| 8 | <li>Two "unknown" Sanger sequencing reads (.ab1 files) for the Blue Line activity.</li> | ||
| 9 | </ol> | ||
Attachments
| 1 | file — ./2 Hour Lesson Plan on DNA Barcoding and Blue Line.docx | 1 | file — ./Hyman Adaptation/1-plant-pos-fall15F_PREMIX_J43474_3.ab1 |
|---|---|---|---|
| 2 | file — ./barcoding_intro_slides.pptx | 2 | file — ./Hyman Adaptation/1-plant-pos-fall15R_PREMIX_J43475_4.ab1 |
| 3 | file — ./Hyman Adaptation/HYMAN et al. 2016 DNA Subway Blue Line Lab KEY.docx | ||
| 4 | file — ./Hyman Adaptation/HYMAN et al. DNA subway lab notebook entry.docx | ||
| 5 | file — ./Hyman Adaptation/HYMAN et al. DNA Subway_ Independent Blue Line Practice.pptx | ||
| 6 | file — ./Hyman Adaptation/HYMAN et al. DNA Subway_ Instructor led Blue Line Practice.pptx | ||
| 7 | file — ./Hyman Adaptation/HYMAN et al. worked example slides for instructors.pptx | ||
| 8 | file — publication_647_677/dna_subway_image.png |