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#165, v1.0 Published:
#600, v1.0.0 Published:

Title

Old VersionNew Version
1Using DNA Subway to Analyze Sequence Relationships 1Intro to DNA Barcoding

Authors

Old VersionNew Version
  1Elizabeth Ryder (Worcester Polytechnic Institute) 
  2Elizabeth Doyle (James Madison University) 
  3William Tapprich (University of Nebraska-Omaha) 
  4Emily Lescak () 
  5Oliver Hyman (The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University ) 
  6Ray A Enke (The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University ) 
  7Sam S Donovan (University of Pittsburgh) 
1Hayley Orndorf (University of Pittsburgh) 8Hayley Orndorf (University of Pittsburgh) 
2Jason Williams (DNA Learning Center) 9Hayley Orndorf ()
   10Andrea Pesce (James Madison University)

Description

Old VersionNew Version
1<p>These are instructions for a 120-minute bioinformatics lab in which students will learn how to use the DNA Subway Blue Line workflow to determine the species of an organism using a DNA sequence.</p>  1<p>Materials include:</p>
2  2  
3<p>This activity is appropriate for a broad audience with an introductory level experience with bioinformatics. The activity is designed for a computer lab setting with a class size between 10 and 50 students.&nbsp;</p> 3<ol>
   4   <li>&nbsp;A&nbsp;short pre-class assignment</li>
   5   <li>A slide deck introducing DNA Barcoding, DNA Subway Blue Line and a short Blue Line activity</li>
   6   <li>Two &quot;unknown&quot; Sanger sequencing reads for the Blue Line activity</li>
   7</ol>

Attachments

1 file — ./2 Hour Lesson Plan on DNA Barcoding and Blue Line.docx 1 file — ./Enke Adaptation/Bugs to Barcode Lecture-Enke.pptx
2 file — ./barcoding_intro_slides.pptx 2 file — ./Enke Adaptation/DNA Subway Blue Line pre class assignment-Enke.docx
3 file — ./Enke Adaptation/unknown_plant_F_read.ab1
4 file — ./Enke Adaptation/unknown_plant_R_read.ab1
5 file — publication_647_678/dna_subway_image.png