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Mysterious Occurrences: Representation, Resiliency, and Redundancy in Native Plant Populations

Meet Dr. Rachel Hackett, a conservation plant biologist at the Michigan Natural Features Inventory.  We learn about Rachel's job and the restoration of threatened and endangered species. Rachel provides some examples of "new" populations and students discuss ways to determine if the population is a remnant or introduced population. 

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Mapping New Discoveries: iNaturalist and Biodiversity Data

Meet Lauren Esposito, the Curator of Arachnology at the California Academy of Sciences. Learn how they use community science to inform new species discovery.

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Rescuing Data: Preserving Data for the Future

Meet Diane Srivastava, director of the Canadian Institute for Ecology and Evolution, and learn how they sythesize and save biodiversity data.

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Sorting through the Data

Meet Thomas McElrath, a insect collection manager at the Illinois Natural History Survey and beetle researcher. Tommy explains the value of data standards while discussing beetles and variations in sex.

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Saving Endangered Species: Zoos, Museums and Biodiversity Data

Resources I’ve created and contributed art towards.

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Promoting Climate Change Literacy for Non-majors: Implementation of an atmospheric carbon dioxide modeling activity as an inquiry-based classroom activity

Students who are directly involved in scientific activities develop a deeper understanding and appreciation of both scientific knowledge and the scientific process. This understanding is critically important in scientific areas like climate change that are the focus of global public and political debate. Toward this end, we used a publicly available atmospheric carbon dioxide modeling activity in a non-major biology course to foster a deeper understanding and appreciation of climate change science. This activity steps students through the development of a basic model of carbon flow between the land, the atmosphere, and the ocean. Students manipulate components of the model to optimize the model based on known data. The model is then used to make predictions for future atmospheric carbon dioxide under scenarios that the students generate and test. For the initial implementation of this lab, pre/post assessment questions evaluated the student's confidence in science and general science knowledge, as well as gauged the usefulness of this class activity. Assessment data and student feedback indicated that the students enjoyed this activity and learned about climate change dynamics and also about the climate change modeling process.

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Movement: Nature's Flying Machines

In this lab, you will explore the physics of flight, the adaptations that make powered flight possible, and the evolution of powered flight in vertebrates and invertebrates.

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Vertebrate Clade Race

This activity introduces basic tree reading skills for evolutionary phylogenies. It is designed as a short group activity. After completing this activity, students should be familiar with basic terminology and how to "read" a phylogenetic tree.

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Cladistic Analysis Lesson Using Bats

Phylogenetic analysis can be a challenging concept to grasp for undergraduate biology students. This cladistic analysis lesson utilizes the amazingly diverse Order Chiroptera as a model to introduce students to major biological concepts such as: phylogenies, morphological traits (shared and unique characters), and hierarchical classification. The lesson is intended for one, two-hour meeting with students majoring in Biological Sciences. Small groups are given a series of photographs and illustrations depicting representative bat families and their external anatomical features. Morphological characters are then scored as being either ancestral or derived for each taxon. Students then build two cladograms using this data and then perform character mapping onto a modified bat tree. The goal of this activity is for students to develop both a deeper understanding of bat classification and core knowledge of cladistic methods.

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Mutualism and Coevolution of Agave and Bats

In this module, students will investigate the mutualistic relationship between Agave its bat pollinators and the effects of coevolution on the morphological adaptations of the species involved.

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Human Evolution for Secondary and College Students

This module is made up of four concepts. The goal of the first concept is to elicit an understanding of primate relatedness, phylogeny, and how specific characteristics are beneficial for life in an arboreal environment. The next concept explains the overarching trends in hominin evolution and the selective pressures that encouraged their development. Concept three examines specific fossils and the characteristics that are associated with them. This concept serves to provide a timeline of hominin evolution. The final concept encourages students to understand characteristics in the hominin lineage and how they relate to social behaviors. This concept ends by driving home the point that evolution is a dynamic and continual process.

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The Tactile Clade Race

This adaptation of the Vertebrate Clade Race provides a tactile approach to introduce basic tree reading skills for evolutionary phylogenies. Using a Universal Design for Learning informed approach, the variation makes the activity accessible for students who are blind or low-vision and streamlines the activity for all students, while retaining the original learning goals. After completing this group activity, students should be familiar with basic terminology and how to "read" a phylogenetic tree.

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Making “sense” out of surface area to volume relationships

Using a multimodal approach, the non-linear aspect of the surface area to volume relationship is explored. Students use their their senses of taste and sight to determine how smaller cells and larger cells differ. Quantitative examples are explored. Concepts of structure and function Examples along the biological hierarchy are provided.

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Mitosis and Meiosis Resources

New stop-motion ‘candymation’ videos of mitosis and meiosis, plus Instructor Guides and problem sets.

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Biodiversity Counts! Making sense of diversity metrics and graphs

In this lesson students 1) become familiar with various graphs that are used to study diversity patterns within and across sites, 2) learn about some of the questions that can be addressed by metabarcoding studies, and 3) reflect on an interview with evolutionary ecologist Maria Rebolleda Gomez, who collected the data used in the lesson.

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Unveiling Lizard Evolution: Graphical Insights into Behavioral Ecology in the Era of Climate Change

This lesson targets entry-level undergraduate students to enhance their proficiency in comprehending and interpreting scientific graphs. The lesson incorporates group discussions centered around several graphs about lizards, together with individual reflective essays and a social media assignment. Students will also gain insights from an interview video featuring Dr. Daniel Warner, the lizard scientist who was responsible for data collection and graph creation explored in the lesson.

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Using Map of Life to Investigate Species Ranges Shifts with Climate Change

Biodiversity databases, based on species occurrences, are now readily available for students to use a free of charge. These databases allow exploration of how species ranges shift through time. One of these tools, Map of Life, has integrated Shared Socioeconomic Pathways (SSPs) to project species occurrences and ranges (based on suitable habitat) through 2070. The different SSPs use variable greenhouse gas emissions scenarios with different climate policies, ranging from sustainable futures to fossil-fueled development. This activity first allows students to explore current ranges and suitable habitat of individual species, globally. Then, students use different SSPs to investigate future projections of species ranges and relate changes in range size to suitable habitat and life history traits.

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Impact of Introduction of American Bullfrogs on Species Diversity

This module explores the introduction of the American bullfrog on their ecosystem. Using species diversity calculations and data collection techniques, students explore how the bullfrog affected the species in its community. Students are introduced to calculations like species richness, species evenness, and species diversity indices. Also, this activity provides students an understanding of how this information is gathered in the field and provides them an opportunity to learn how to collect data themselves.

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Bioinformatics is a BLAST: Engaging First-Year Biology Students on Campus Biodiversity Using DNA Barcoding

In order to introduce students to the concept of molecular diversity, we developed a short, engaging online lesson using basic bioinformatics techniques. Students were introduced to basic bioinformatics while learning about local on-campus species diversity by 1) identifying species based on a given sequence (performing Basic Local Alignment Search Tool [BLAST] analysis) and 2) researching and documenting the natural history of each species identified in a concise write-up. To assess the student’s perception of this lesson, we surveyed students using a Likert scale and asking them to elaborate in written reflection on this activity. When combined, student responses indicated that 94% of students agreed this lesson helped them understand DNA barcoding and how it is used to identify species. The majority of students, 89.5%, reported they enjoyed the lesson and mainly provided positive feedback, including “It really opened my eyes to different species on campus by looking at DNA sequences”, “I loved searching information and discovering all this new information from a DNA sequence”, and finally, “the database was fun to navigate and identifying species felt like a cool puzzle.” Our results indicate this lesson both engaged and informed students on the use of DNA barcoding as a tool to identify local species biodiversity.

Primary Image: DNA Barcoded Specimens. Crane fly, dragonfly, ant, and spider identified using DNA barcoding.

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Coaching students in growth mindset development

This is an example of my attempts to help students develop a growth mindset towards their studies.  It utilizes assignments with multiple attempts, rewarding practice.

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Unveiling Molecular Beauty: A Sensory Journey

Presentation by Christin Monroe on Mar 8, 2024

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Tree Thinking Assessment (Blacquiere and Hoese 2016)

This is a paper that describes a validated assessment of students' ability to interpret phylogenetic trees.

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Using genomic data and machine learning to predict antibiotic resistance: a tutorial paper

Antibiotic resistance is a global public health concern. Bacteria have evolved resistance to most antibiotics, which means that for any given bacterial infection, the bacteria may be resistant to one or several antibiotics. For effective treatment and to control the spread of resistant strains of bacteria, accurate and efficient detection of resistance is important. It has been suggested that genomic sequencing and machine learning (ML) could make resistance testing more accurate and cost-effective. Given that ML is likely to become an ever more important tool in medicine, we believe that it is important for pre-health students and others in the life sciences to learn to use machine learning tools. This paper provides a step-by-step tutorial to learn four different ML models to predict drug resistance for E. coli isolates based on genomic data. The tutorial is accessible to beginners, doesn’t require any software to be installed as it is based on Google Colab notebooks, and can be used in undergraduate and graduate classes.

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