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RNAseq data analysis using Galaxy

This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

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Keith A. Johnson onto Genetics

Using DNA Subway to Analyze Sequence Relationships

This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

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Keith A. Johnson onto Genetics

Bioinformatics: An Interactive Introduction to NCBI

Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide sequence from an insect endosymbiont by using BLAST

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Keith A. Johnson onto Genetics

Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts

Lesson on what it means for biological processes to be Poissonian, published in CourseSource

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Keith A. Johnson onto Genetics

Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to various classroom settings, published in...

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Keith A. Johnson onto Genetics

Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches

In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic bioinformatics resources and data through use of the...

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Keith A. Johnson onto Genetics

Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I

The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry educators integrate Black scientists' work in their curricula.

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Jennifer Kovacs onto Fall 2020

Passion-Driven Statistics

E-book in .pdf format and customizable .iba format

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Jennifer Kovacs onto Spring 2021

Intro to Synthetic Biology

This course is for first year students and is intended to teach them how to think like a scientist and get them excited about biology. By no means is it a comprehensive Synthetic Biology course; rather, students explore basic molecular biology in the first third of the course, work through actual synthetic biology research in the second third, and apply their knowledge of this field to ethical issues in the last third.

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Dan Pierce onto Syllabi

CyVerse: Scalable Image Informatics

CyVerse Scalable bioinformatics

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Alice Tarun onto Posters BIOME 2020

Implementing a Math Prerequisite - Does it help or hurt?

Math prerequisite for Gen Bio in Community College

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Alice Tarun onto Posters BIOME 2020

Remote Teaching - Free Tech Resources (meta tagged by grade level, content area, etc.)

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Stacey Kiser onto Working From Home Resources

Conservation Biology and Ethics in Synthetic Biology

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Fran Sandmeier onto Ethics in synthetic biology

Colorado State University - Pueblo Population Genetics

An ethics case study is included in the course material.

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Fran Sandmeier onto Syllabi

Data is the New Science

In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply what they have learned to research question.

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J. Stephen Gosnell onto ideas for env 1003/1004

DataClassroom

OUR MISSION

Data skills are key to solving the biggest problems of tomorrow. DataClassroom exists to help students understand both those problems and how to unlock their solutions.

As data becomes an increasingly valuable resource across all fields, the teaching of data skills is becoming increasingly important for middle and high school classrooms. At the same time, as educators, we recognize that the best part of a science education will always be hands-on labs and authentic experimentation. DataClassroom provides teachers the opportunity to integrate next generation data-skills seamlessly with the learning experiences they are already creating. 

WHAT CAN DATACLASSROOM DO? 

The web-based app lets students engage with data and do real analysis. Even students with no statistics background can upload and visualize their own data, ask a question, and use a statistical test to form a conclusion. Your students will learn data analysis by doing data analysis.

While performing analysis with professional accuracy, the students are shown each step in the process through animations and are encouraged to think about what is being done, and why.

WHY IS IT DIFFERENT?

Our founder Aaron Reedy realized that classroom experiments were the lessons that most engaged science students and were often remembered even years later. He continually pushed his students to do better and bigger experiments in the classroom, but realized that available tools for data analysis were not built for kids. Now, with the demands of the Next Generation Science Standards, an even greater emphasis is placed on developing quantitative and analytical skills in the K-16 science education. Teachers and students need a tool that lets them analyze their data, but does not assume a graduate level knowledge of statistics.

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Christine Girtain onto Resources for working with data

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

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Lisa Scheifele onto The Scramble System

SCRaMbLEing of a Synthetic Yeast Chromosome with Clustered Essential Genes Reveals Synthetic Lethal Interactions

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Lisa Scheifele onto The Scramble System

SCRaMbLE generates evolved yeasts with increased alkali tolerance

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Lisa Scheifele onto The Scramble System

Nature Communications 2018 Yeast 2.0 Collection

A collection of 9 papers all describing improvements and applications of the Scramble system

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Lisa Scheifele onto The Scramble System

Unintended consequences of framing a utility-value intervention in two-year colleges

Canning, E. A., Priniski, S. J., & Harackiewicz, J. M. (2019). Unintended consequences of framing a utility-value intervention in two-year colleges. Learning and Instruction, 62, 37-48. https://doi.org/10.1016/j.learninstruc.2019.05.001

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COVID-19 Simulator (ISEE) Module

This accessible module guides students through exploring the COVID-19 Simulator developed by ISEE. Students dig into the four scenarios provided (including the parameters and the graphs), construct their own scenarios, and interpret their results.

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Joanna Wares onto COVID

Materials for Teaching the SIR Epidemic Model

This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.

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Joanna Wares onto COVID