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RNAseq data analysis using Galaxy

By Matthew Escobar

California State University - San Marcos

This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

Listed in Teaching Materials | resource by group NIBLSE Incubator: RNAseq data analysis using Galaxy

Version 1.0 - published on 03 Jul 2017 doi:10.25334/Q4R07T - cite this Last public release: 3.0

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

rnaseq_galaxy.GIF

Description

This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.

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NIBLSE Incubator: RNAseq data analysis using Galaxy

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