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RNAseq data analysis using Galaxy

Author(s): Matthew Escobar

California State University - San Marcos

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Summary:
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
Contents:

Description

This resource involves downloading RNAseq data sets from NCBI SRA and using Galaxy tools to identify differentially expressed genes (in this case Arabidopsis roots +/- nematode infection). Students are introduced to all major computational steps in RNAseq data analysis, including the concept of computational pipelines/workflows.

Notes

Version 2 includes updates from the author based on NIBLSE RRC recommendations. 

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