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Resources: Teaching Materials

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  1. Open QUBES - A Faculty Use Case of Open Practice

    Open QUBES - A Faculty Use Case of Open Practice

    2019-11-18 22:34:26 | Contributor(s): Sarah Prescott | doi:10.25334/PR5J-SC51

    QUBES has been a critical component of my continued success as an open scholar. This poster details several of these outcomes with my lived experience working with QUBES as an Open scholar as a case study.

  2. Teaching Population Dynamics with Data and HHMI BioInteractive

    Teaching Population Dynamics with Data and HHMI BioInteractive

    2019-11-16 22:04:49 | Contributor(s): Abby Kula, Kristine Grayson | doi:10.25334/DRTS-CZ24

    Presented at NABT 2019, we demonstrate how the Population Dynamics Click & Learn resource can be customized for any organism - using the Lionfish invasion as an example

  3. Quantitative Biology at Community Colleges Network Meeting Code of Conduct

    Quantitative Biology at Community Colleges Network Meeting Code of Conduct

    2019-11-13 00:36:30 | Contributor(s): Kristin Jenkins, Vedham Karpakakunjaram | doi:10.25334/8431-E864

    Code of Conduct for the Quantitative Biology at Community Colleges (QBCC) Network Meeting in February 2020

  4. Evaluation of NSF RCN-UBE SCORE

    Evaluation of NSF RCN-UBE SCORE

    2019-11-07 15:23:13 | Contributor(s): Robin Taylor | doi:10.25334/RJDM-SM61

    Data summary for evaluation findings of the NSF RCN-UBE: Sustainability Challenges for Open Resources to promote an Equitable Undergraduate Biology Education (SCORE) summit held at Bates College, October 2019.

  5. Population Demography in Swirl

    Population Demography in Swirl

    2019-11-06 20:53:02 | Contributor(s): Emily Weigel | doi:10.25334/H2QK-FD50

    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

  6. Earth Analytics in Python Course

    Earth Analytics in Python Course

    2019-11-01 14:37:29 | Contributor(s): Leah Wasser, Jenny Palomino, Chris Holdgraf | doi:10.25334/SH4R-QH25

    Earth analytics is an intermediate, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of heterogeneous ‘big scientific data’.

  7. Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly

    Neochromosomes: Creating transcriptional units with yeast Golden Gate assembly

    2019-10-29 14:18:59 | Contributor(s): Eric Cooper | doi:10.25334/3J95-S075

    This resource is a series of protocols using the yeast Golden Gate (yGG) method as developed by Neta Agmon and Leslie Mitchell in Jef Boeke’s lab to assemble a functional yeast gene with protein-coding and regulatory sequences.

  8. The QUBES Resource System:  Integrating open educational practices into diverse education reform communities

    The QUBES Resource System: Integrating open educational practices into diverse education reform communities

    2019-10-28 23:18:02 | Contributor(s): Sam S Donovan, Drew LaMar, Hayley Orndorf, Sarah Prescott | doi:10.25334/X9F5-7C81

    Presentation on the QUBES Resource System given at the 16th Annual Open Education Conference

  9. A Curious Display

    A Curious Display

    2019-10-28 16:56:17 | Contributor(s): Margaret Waterman, Brandon Call, Sandi Connelly, Kristin Jenkins, Sam Catherine Johnston, Vedham Karpakakunjaram, Viet Le, Hayley Orndorf, Melissa Skyer, Barbara Spiecker | doi:10.25334/979W-CY69

    Case study on genetically modified organisms

  10. Intro videos and terminology for GMOs, Transcription, Translation

    Intro videos and terminology for GMOs, Transcription, Translation

    2019-10-28 16:35:24 | Contributor(s): Sandi Connelly | doi:10.25334/CJZQ-3K68

    Compiled resources around GMOs and protein production including vocabulary, animations, videos, and games

  11. Gelin’: Gel Electrophoresis Simulation

    Gelin’: Gel Electrophoresis Simulation

    2019-10-24 17:57:29 | Contributor(s): Beyond Benign | doi:10.25334/H121-N731

    Students will understand how DNA is separated into a fingerprint by using a chromatography activity to simulate gel electrophoresis.

  12. Complete Set of Lessons

    Complete Set of Lessons

    2019-10-23 15:16:23 | Contributor(s): Anne Rosenwald, Gaurav Arora, Vinayak Mathur | doi:10.25334/E4GQ-2S85

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with an authentic community research project.

  13. Lesson III - Annotation

    Lesson III - Annotation

    2019-10-23 14:50:05 | Contributor(s): Gaurav Arora | doi:10.25334/9MR2-DX11

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all the A's, C's, T's, and G's.

  14. Lesson III - Annotation

    Lesson III - Annotation

    2019-10-23 14:49:24 | Contributor(s): Gaurav Arora | doi:10.25334/2XEK-ME57

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all the A's, C's, T's, and G's.

  15. Lesson V - Phylogenetics

    Lesson V - Phylogenetics

    2019-10-22 21:27:41 | Contributor(s): Anne Rosenwald, Gaurav Arora, Vinayak Mathur | doi:10.25334/HBAR-5X64

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

  16. Lesson VII - Synteny

    Lesson VII - Synteny

    2019-10-22 21:21:12 | Contributor(s): Gaurav Arora, Anne Rosenwald, Vinayak Mathur | doi:10.25334/HV52-1P80

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

  17. Inclusive Pedagogy for Life Science Education Tagging Ontology

    Inclusive Pedagogy for Life Science Education Tagging Ontology

    2019-10-18 02:08:50 | Contributor(s): Carrie Diaz Eaton, Sharon Rivera, Bryan Dewsbury | doi:10.25334/FFE7-ES61

    Inclusive Pedagogy for Life Science Education Tagging Ontology

  18. Get Started With GIS in Open Source Python Workshop

    Get Started With GIS in Open Source Python Workshop

    2019-10-15 20:27:32 | Contributor(s): Leah Wasser, Jenny Palomino, Joe McGlinchy

    There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in Python.

  19. Introduction to Version Control and Git Workshop

    Introduction to Version Control and Git Workshop

    2019-10-15 20:22:16 | Contributor(s): Leah Wasser, Max Joseph

    Learn how to use version control with Git to work collaboratively and back up your work.

  20. Writing Clean Code in R Workshop

    Writing Clean Code in R Workshop

    2019-10-15 20:18:39 | Contributor(s): Max Joseph, Leah Wasser

    When working with data, you often spend the most amount of time cleaning your data. Learn how to write more efficient code using the tidyverse in R.