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  1. 2014 QUBES Minisymposium at the Seventh International Symposium on Biomathematics and Ecology: Education and Research

    2014 QUBES Minisymposium at the Seventh International Symposium on Biomathematics and Ecology: Education and Research

    2018-01-03 19:37:58 | Teaching Materials | Contributor(s): Drew LaMar, Carrie Diaz Eaton, Jeremy M Wojdak, DorothyBelle Poli, Bob Sheehy, Sam S Donovan, Kristin Jenkins, Tom Gower | doi:10.25334/Q4JM3N

    Collection of presentations that were part of a minisymposium at the Seventh International Symposium on Biomathematics and Ecology: Education and Research in 2014.

  2. 2015 BEER Minisymposium: QUBES: Online community and resources for quantitative biology education

    2015 BEER Minisymposium: QUBES: Online community and resources for quantitative biology education

    2018-01-03 18:52:36 | Teaching Materials | Contributor(s): Carrie Diaz Eaton, Drew LaMar | doi:10.25334/Q4B374

    Presentations included in a minisymposium at the Eighth International Symposium on BEER, Illinois State University, Normal, IL

  3. 2015 Quantitative Biology Education Summit

    2015 Quantitative Biology Education Summit

    2018-01-03 19:15:36 | Teaching Materials | Contributor(s): Kristin Jenkins, Sam S Donovan, Tanya Dewey, Tom Gower, Drew LaMar | doi:10.25334/Q42M39

    Abstract for a meeting, 2015 Quantitative Biology Education Summit.

  4. 2015 SMB Minisymposium: Topics in Biomathematics Education

    2015 SMB Minisymposium: Topics in Biomathematics Education

    2018-01-04 15:02:21 | Teaching Materials | Contributor(s): Elsa Schaefer, Dorothy Wallace, Carrie Diaz Eaton | doi:10.25334/Q4GQ2P

    Collection of presentations given at the 2015 SMB Minisymposium: Topics in Biomathematics Education

  5. 2016 SIAM ED: Exploring Frameworks for the Teaching of Modeling

    2016 SIAM ED: Exploring Frameworks for the Teaching of Modeling

    2018-01-03 17:53:41 | Teaching Materials | Contributor(s): Carrie Diaz Eaton, Drew LaMar | doi:10.25334/Q43M40

    Presentations included in a Minisymposium at the 2016 SIAM Conference on Applied Mathematics Education

  6. 3D breast cancer tissue reconstruction

    3D breast cancer tissue reconstruction

    2018-09-17 20:58:43 | Teaching Materials | Contributor(s): Jeremy M Wojdak, Kerri-Ann Norton | doi:10.25334/Q4WM6W

    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

  7. 3D breast cancer tissue reconstruction image files

    3D breast cancer tissue reconstruction image files

    2018-09-17 20:49:54 | Teaching Materials | Contributor(s): Jeremy M Wojdak | doi:10.25334/Q4ZM7W

    Database of image files for AIMS Resource: 3D breast cancer tissue reconstruction

  8. 3D FractaL-Tree

    3D FractaL-Tree

    2018-09-11 15:51:27 | Teaching Materials | Contributor(s): John R Jungck, Jennifer Spangenberg, Noppadon Khiripet, Rawin Viruchpinta, Jutarat Maneewattanapluk | doi:10.25334/Q48139

    3D FractaL-Tree allows scientists to collect data from actual specimens in the field or laboratory, insert these measurements into a spatially explicit L-system package, and then visually compare to the computer generated 3D image with such specimens.

  9. 50 Years of Data Science

    50 Years of Data Science

    2018-10-30 10:36:16 | Teaching Materials | Contributor(s): David Donoho | doi:10.25334/Q42B0D

    This paper reviews some ingredients of the current “Data Science moment”, including recent commentary about data science in the popular media, and about how/whether Data Science is really different from Statistics.

  10. A BioGraphy of Life: How Graph Theory Makes Mathematics Recognizable, Relevant, and Research-Rich in Biology Education

    A BioGraphy of Life: How Graph Theory Makes Mathematics Recognizable, Relevant, and Research-Rich in Biology Education

    2018-01-03 17:36:32 | Teaching Materials | Contributor(s): John R Jungck | doi:10.25334/Q4MM4N

    Presentation given at the 2106 SIAM Conference on Applied Mathematics Education on graph theory.

  11. A collaborative approach to quantitative biology course reform: It's better than doing it all by yourself

    A collaborative approach to quantitative biology course reform: It's better than doing it all by yourself

    2018-01-03 15:34:58 | Teaching Materials | Contributor(s): Jeremy M Wojdak | doi:10.25334/Q4PH3V

    This is the abstract of an oral presentation given at the Society for Mathematical Biology Annual Meeting in Atlanta, GA in 2015.

  12. A Curious Display

    A Curious Display

    2019-10-28 16:56:17 | Teaching Materials | Contributor(s): Margaret Waterman, Brandon Call, Sandi Connelly, Kristin Jenkins, Sam Catherine Johnston, Vedham Karpakakunjaram, Viet Le, Hayley Orndorf, Melissa Skyer, Barbara Spiecker | doi:10.25334/979W-CY69

    Case study on genetically modified organisms

  13. A Direct Experience Study of Density-Dependent Growth

    A Direct Experience Study of Density-Dependent Growth

    2016-05-04 14:41:20 | Teaching Materials | Contributor(s): Glenn Ledder

    An experiential approach to density-dependent growth using a checkerboard, 6-sided die, and two types of markers.

  14. A Framework for Modeling to Encourage Interdisciplinary Conversations

    A Framework for Modeling to Encourage Interdisciplinary Conversations

    2018-01-02 18:12:42 | Teaching Materials | Contributor(s): Carrie Diaz Eaton | doi:10.25334/Q48D67

    Presentation given as part of a minisymposium at SIAM 2016 on interdisciplinary approaches to modeling.

  15. A Framework for Teaching Modeling to Biologists

    A Framework for Teaching Modeling to Biologists

    2018-01-02 18:15:07 | Teaching Materials | Contributor(s): Drew LaMar | doi:10.25334/Q40X0N

    Abstract for presentation at SIAM ED 2016 on modeling

  16. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    2019-06-07 20:09:22 | Teaching Materials | Contributor(s): Rachael St. Jacques, Max Maza, Sabrina Robertson, Guoqing Lu, Andrew Lonsdale, Ray A Enke | doi:10.25334/Q4D172

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

  17. A Growing Concern: Sustaining Soil Resources through Local Decision Making

    A Growing Concern: Sustaining Soil Resources through Local Decision Making

    2018-01-11 20:25:24 | Teaching Materials | Contributor(s): Sarah Fortner, Martha Murphy, Hannah Scherer | doi:10.25334/Q40D5C

    This module addresses this need by providing students the opportunity to examine the differences between intensively managed agricultural landscapes (e.g. grazelands, conventional tillage) and "natural" landscapes (forested or prairie).

  18. A Hands-on Introduction to Hidden Markov Models

    A Hands-on Introduction to Hidden Markov Models

    2019-01-04 16:23:48 | Teaching Materials | Contributor(s): Tony Weisstein, Elena Gracheva, Zane Goodwin, Zongtai Qi, Wilson Leung, Christopher D. Shaffer, Sarah C.R. Elgin | doi:10.25334/Q4ZM88

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

  19. A New Hub for QUBES based on the HUBzero Platform

    A New Hub for QUBES based on the HUBzero Platform

    2018-01-03 19:25:30 | Teaching Materials | Contributor(s): Michael McLennan | doi:10.25334/Q4T37G

    Presentation on QUBES and Hubzero given at the Seventh International Symposium on Biomathematics and Ecology: Education and Research 2014, Claremont, CA

  20. A Pipeline in Paradise

    A Pipeline in Paradise

    2018-04-03 15:39:07 | Teaching Materials | Contributor(s): Victoria Schneider | doi:10.25334/Q4CM33

    I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.