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  1. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    2019-06-07 20:09:22 | Teaching Materials | Contributor(s): Rachael St. Jacques, Max Maza, Sabrina Robertson, Guoqing Lu, Andrew Lonsdale, Ray A Enke | doi:10.25334/Q4D172

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

  2. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    2019-05-29 18:10:28 | Teaching Materials | Contributor(s): Ami Erickson | doi:10.25334/Q4H458

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein sequences between Arabidopsis, moss and yeast.

  3. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    2019-05-16 20:29:12 | Teaching Materials | Contributor(s): William Tapprich | doi:10.25334/Q47X63

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships between Ebola virus strains.

  4. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    2019-05-02 18:42:15 | Teaching Materials | Contributor(s): Adam Kleinschmit, Benita Brink, Steven Roof, Carlos Christopher Goller, Sabrina Robertson | doi:10.25334/Q4G45Z

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

  5. Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

    2019-01-04 18:09:41 | Teaching Materials | Contributor(s): Mark Phillip Peterson, Jacob T Malloy, Vincent P Buonaccorsi, James H Marden | doi:10.25334/Q4643Q

    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to various classroom settings, published in...

  6. Making toast: Using analogies to explore concepts in bioinformatics

    Making toast: Using analogies to explore concepts in bioinformatics

    2019-01-04 17:39:39 | Teaching Materials | Contributor(s): Kate L. Hertweck | doi:10.25334/Q4FM90

    Module using analogies to introduce students to genomics

  7. A Hands-on Introduction to Hidden Markov Models

    A Hands-on Introduction to Hidden Markov Models

    2019-01-04 16:23:48 | Teaching Materials | Contributor(s): Tony Weisstein, Elena Gracheva, Zane Goodwin, Zongtai Qi, Wilson Leung, Christopher D. Shaffer, Sarah C.R. Elgin | doi:10.25334/Q4ZM88

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

  8. Bioinformatics / Neuroinformatics

    Bioinformatics / Neuroinformatics

    2019-01-03 16:18:23 | Teaching Materials | Contributor(s): William Grisham | doi:10.25334/Q45B1Q

    This module is a computer-based introduction to bioinformatics resources.  This easy-to-adopt module weaves together several important bioinformatic tools so students can grasp how each is used in answering research questions. Published in CBE-LSE

  9. Using DNA Subway to Analyze Sequence Relationships

    Using DNA Subway to Analyze Sequence Relationships

    2018-05-30 14:32:27 | Teaching Materials | Contributor(s): Jason Williams, Ray A. Enke, Oliver Hyman, Emily Lescak, Sam S Donovan, William Tapprich, Elizabeth F Ryder | doi:10.25334/Q4J111

    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

  10. RNAseq data analysis using Galaxy

    RNAseq data analysis using Galaxy

    2017-11-13 18:46:18 | Teaching Materials | Contributor(s): Matthew Escobar, Sam S Donovan, Irina Makarevitch, Bill Morgan, Sabrina Robertson | doi:10.25334/Q42H38

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

  11. DNA Subway Learning Resources

    DNA Subway Learning Resources

    2017-10-18 16:08:06 | Teaching Materials | Contributor(s): Jason Williams | doi:10.25334/Q45D5X

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

  12. Needleman - Wunsch Algorithm Exercise

    Needleman - Wunsch Algorithm Exercise

    2017-06-05 20:09:17 | Teaching Materials | Contributor(s): Michael Sierk

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.