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  1. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    2019-05-29 18:10:28 | Teaching Materials | Contributor(s): Ami Erickson | doi:10.25334/Q4H458

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein sequences between Arabidopsis, moss and yeast.

  2. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    2019-05-16 20:29:12 | Teaching Materials | Contributor(s): William Tapprich | doi:10.25334/Q47X63

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships between Ebola virus strains.

  3. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    2019-05-02 18:42:15 | Teaching Materials | Contributor(s): Adam Kleinschmit, Benita Brink, Steven Roof, Carlos Christopher Goller, Sabrina Robertson | doi:10.25334/Q4G45Z

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

  4. Colon Cancer: A Case of Genetic Bad Luck

    Colon Cancer: A Case of Genetic Bad Luck

    2019-01-03 16:43:30 | Teaching Materials | Contributor(s): Anne M. Casper | doi:10.25334/Q4WT7B

    Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

  5. Bioinformatics: An Interactive Introduction to NCBI

    Bioinformatics: An Interactive Introduction to NCBI

    2019-01-03 16:03:45 | Teaching Materials | Contributor(s): Seth Bordenstein | doi:10.25334/Q4915C

    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide sequence from an insect endosymbiont by using BLAST

  6. How to Use BLASTP NCBI

    How to Use BLASTP NCBI

    2018-04-12 00:40:07 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4G68S

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

  7. NCBI Overview

    NCBI Overview

    2018-04-12 00:00:17 | Teaching Materials | Contributor(s): Laura Harris | doi:10.25334/Q4H683

    An overview of some of the databases within NCBI and how to get FASTA sequences.

  8. RNAseq data analysis using Galaxy

    RNAseq data analysis using Galaxy

    2017-11-13 18:46:18 | Teaching Materials | Contributor(s): Matthew Escobar, Sam S Donovan, Irina Makarevitch, Bill Morgan, Sabrina Robertson | doi:10.25334/Q42H38

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

  9. PPS

    PPS

    2016-05-07 17:01:42 | Teaching Materials | Contributor(s): Sam S Donovan

    I guess this is required