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  1. EvolSeq

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    14 Sep 2015 | Teaching & Reference Material | Contributor(s): Tony Weisstein, John R Jungck

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/776This worksheet simulates the molecular evolution of DNA sequences. The program begins with a single (random) sequence, then follows that sequence through time as it...

  2. Exploring contact patterns between two subpopulations

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we introduce a construction of generic random graphs for a given degree sequence or degree distribution and explore whether mixing between hosts who belong to different subpopulations is assortative or disassortative.Level: Undergraduate students of biology or...

  3. Exploring contact patterns between two subpopulations

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we introduce a construction of generic random graphs for a given degree sequence or degree distribution and explore whether mixing between hosts who belong to different subpopulations is assortative or disassortative.Level: Undergraduate students of biology or...

  4. Exploring Disease Transmission on Networks with NetLogo

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Ying Xin

  5. Exploring distances with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    Section 1 is purely conceptual and invites readers to critically evaluate popular claims based on Stanley Milgram's famous experiment that gave birth to the phrases small-world property and six degrees of separation. In Section 2 we use IONTW to explore distances between nodes in several...

  6. Exploring distances with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    Section 1 is purely conceptual and invites readers to critically evaluate popular claims based on Stanley Milgram's famous experiment that gave birth to the phrases small-world property and six degrees of separation. In Section 2 we use IONTW to explore distances between nodes in several...

  7. Exploring Erdős-Rényi random graphs with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we explore in detail the distribution of the sizes of connected components of Erdős-Rényi random graphs and discover the reasons for the similarities and differences between disease transmission on Erdős-Rényi networks and complete graphs that were observed in...

  8. Exploring Erdős-Rényi random graphs with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we explore in detail the distribution of the sizes of connected components of Erdős-Rényi random graphs and discover the reasons for the similarities and differences between disease transmission on Erdős-Rényi networks and complete graphs that were observed in...

  9. Exploring generic scale-free networks

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    02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    This module is a companion module to Module [[Resource(384)]]. Here we study in more detail networks that are generic for a given network size and a given exponent of a power-law degree distribution. We explore predicted structural properties of such networks both mathematically and with...

  10. Exploring generic scale-free networks

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    02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    This module is a companion module to Module [[Resource(384)]]. Here we study in more detail networks that are generic for a given network size and a given exponent of a power-law degree distribution. We explore predicted structural properties of such networks both mathematically and with...

  11. Exploring random regular graphs with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we introduce and explore the structure of random regular graphs. Moreover, we compare the predictions of SIR-models on random regular contact networks with the predictions of corresponding models on Erdős-Rényi networks.Level: Undergraduate students of biology or...

  12. Exploring random regular graphs with IONTW

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    10 May 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we introduce and explore the structure of random regular graphs. Moreover, we compare the predictions of SIR-models on random regular contact networks with the predictions of corresponding models on Erdős-Rényi networks.Level: Undergraduate students of biology or...

  13. Exploring the Lotka-Volterra Competition Model using Two Species of Parasitoid Wasps

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    25 Mar 2015 | Teaching & Reference Material | Contributor(s): Christopher W. Beck, Judy A. Guinan, Lawrence S. Blumer, Robert W. Matthews

    This resource has been updated - find the current version here: https://qubeshub.org/publications/270Laboratory exercise in which students collect data on parasitoid wasps and fit Lotka-Volterra competition models.  The authors' abstract:"In this investigation,...

  14. Exploring the Lotka-Volterra Competition Model using Two Species of Parasitoid Wasps

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    25 Mar 2015 | Teaching & Reference Material | Contributor(s): Christopher W. Beck, Judy A. Guinan, Lawrence S. Blumer, Robert W. Matthews

    This resource has been updated - find the current version here: https://qubeshub.org/publications/270Laboratory exercise in which students collect data on parasitoid wasps and fit Lotka-Volterra competition models.  The authors' abstract:"In this investigation,...

  15. Exploring the Population Dynamics of Wintering Bald Eagles Through Long-Term Data

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    23 Sep 2015 | Teaching & Reference Material | Contributor(s): Julie Beckstead, Alexandra Lagasse, Scott Robinson

    This resource has been updated - find the current version here: https://qubeshub.org/publications/265The Ecological QuestionHow does a bald eagle population change over time at a winter migratory stopover and which factors influence its abundance?This activity has two different aspects to...

  16. Exploring the Population Dynamics of Wintering Bald Eagles Through Long-Term Data

    0.0 out of 5 stars 

    23 Sep 2015 | Teaching & Reference Material | Contributor(s): Julie Beckstead, Alexandra Lagasse, Scott Robinson

    This resource has been updated - find the current version here: https://qubeshub.org/publications/265The Ecological QuestionHow does a bald eagle population change over time at a winter migratory stopover and which factors influence its abundance?This activity has two different aspects to...

  17. Exponential Growth by Bozeman Science

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    03 Oct 2015 | Teaching & Reference Material | Contributor(s): Paul Andersen

    Youtube video

  18. Facial Bones

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    29 Sep 2017 | Teaching & Reference Material | Contributor(s): Katherine Poole

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/873There are 14 beautiful facial bones six of them are paired and two of them are unpaired, for a grand total of 14 facial bones. The facial bones...

  19. Faculty Mentoring Networks: A model for professional development in undergraduate quantitative biology education

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    17 Nov 2016 | Teaching & Reference Material | Contributor(s): Alison N Hale, Arietta Fleming-Davies, Gabriela Hamerlinck, Melissa Aikens, Sam S Donovan, Kristin Jenkins, Jeremy M Wojdak

    This resource has been updated - find the current version here: https://qubeshub.org/publications/208There is a significant need to design and test alternative models for faculty development around undergraduate science teaching. Existing models for helping faculty adopt evidence-based...

  20. Faculty Mentoring Networks: A Model for Promoting Teaching Scholarship in Quantitative Biology Education

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    06 Apr 2017 | Teaching & Reference Material | Contributor(s): Sam S Donovan, Alison N Hale, Arietta Fleming-Davies, Gabriela Hamerlinck, Jeremy M Wojdak, Kristin Jenkins

    This resource has been updated - find the current version here: https://qubeshub.org/publications/205/Faculty Mentoring Networks (FMNs) are designed to support the development of teaching scholarship by promoting teacher identity, self-efficacy, and knowledge/experience via four core design...

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