Resources: All

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  1. Collecting and analyzing binomial data

    17 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

    In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

  2. Swirl

    10 Jul 2020 | Software (On-site)

    Swirl: Learn R, in R

  3. Radiant Lite

    24 Jul 2019 | Software (On-site) | Contributor(s): Drew LaMar

    Stripped down version of Radiant on QUBES

  4. Outstanding Oaks: Quercus phenology at NEON sites

    09 Oct 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

  5. Investigating Trade-offs among Mammal Traits

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  6. Modeling the Mechanisms of Evolution

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  7. Google Charts Example - Bubble

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  8. R Shiny App Example

    09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

  9. Introduction to Genome Browser: What is a Gene?

    21 Feb 2018 | Teaching & Reference Material | Contributor(s): Joyce Stamm

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/850 Genes encode information that our cells use to carry out their functions. In particular,...

  10. Avida-ED

    06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  11. Radiant

    16 Sep 2015 | Software (On-site)

    Business analytics using R and Shiny.

  12. Citations

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark

    We present an inquiry-based curriculum based on the digital evolution platform Avida-ED (http://avida-ed.msu.edu). We designed an instructional sequence and lab book consisting of an introduction to Avida-ED and a set of three lessons focused on specific evolutionary concepts. These served to...

  13. Avida-ED Lab Book Summer 2017

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  14. Avida-ED Lab Book Summer 2017

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  15. Free Introduction to R Course at DataCamp

    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/914In this introduction to R, you will master the basics of this beautiful open source language, including factors, lists and data frames. With the knowledge gained in this...

  16. DataCamp

    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/913The Easiest Way to Learn Data Science OnlineMaster data analysis from the comfort of your browser, at your own pace, tailored to your needs and expertise. Whether...

  17. Wood Density

    15 Oct 2015 | Software (On-site)

    Wood density shiny app

  18. Course materials for computational genomics using R

    19 Nov 2015 | Teaching & Reference Material | Contributor(s): Hong Qin

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/907The R code and data are deposited at Github: https://github.com/hongqin/RCompBio 

  19. Modernizing Statistics Education via Biology Applications

    21 Oct 2015 | Teaching & Reference Material | Contributor(s): Olcay Akman

    This resource has been updated - find the current version here: https://qubeshub.org/publications/254In most traditional statistics courses, instructors use data from different fields in an effort to give the courses an interdisciplinary flavor. They generally fail because these attempts...

  20. Population Genetics: When Darwin Met Mendel - Crash Course Biology

    03 Oct 2015 | Teaching & Reference Material | Contributor(s): CrashCourse

    This Youtube video talks about population genetics, which helps to explain the evolution of populations over time by combing the principles of Mendel and Darwin, and by means of the Hardy-Weinberg equation, all in an upbeat, modern and somewhat zany manner.