You are here: Home / Tags / bioinformatics / Resources

Tags: bioinformatics

More tags

Resources (101-120 of 130)

  1. Sequence Similarity: Introducing Biological Databases to Community College Biology Students

    01 Jun 2021 | Teaching Materials | Contributor(s):

    By Jennifer Katcher

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/2407/?v=1

  2. Simple Heat Maps with Morpheus

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    https://qubeshub.org/publications/461/?v=1

  3. Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson

    24 Sep 2021 | Teaching Materials | Contributor(s):

    By Leigh Ann Samsa*1, Melissa Eslinger2, Adam Kleinschmit3, Amanda Solem4, Carlos C. Goller*1

    1. North Carolina State University 2. United States Military Academy 3. University of Dubuque 4. Hastings College

    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...

    https://qubeshub.org/publications/2753/?v=1

  4. Tackling "Big Data" with Biology Undergrads: A Simple RNA-seq Data Analysis Tutorial Using Galaxy

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Matthew Anthony Escobar*1, William Morgan2, Irina Makarevitch3, Sabrina Robertson4

    1. California State University San Marcos 2. The College of Wooster 3. Hamline University 4. North Carolina State University

    Analyzing high-throughput DNA sequence data is a fundamental skill in modern biology. However, real and perceived barriers such as massive file sizes, substantial computational requirements, and...

    https://qubeshub.org/publications/2626/?v=1

  5. Teaching Protein Structure Modeling

    21 Mar 2023 | Teaching Materials | Contributor(s):

    By SOMCHAI SAENGAMNATDEJ

    Naresuan University Faculty of Medical Science

    New strains of microbes have been regularly discovered and brought into a laboratory for study in many different directions. When a new microbial genome is sequenced and assembled, the homologues...

    https://qubeshub.org/publications/3845/?v=1

  6. Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

    22 Aug 2021 | Teaching Materials | Contributor(s):

    By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3

    1. Viterbo University 2. Juniata College 3. Pennsylvania State University

    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    https://qubeshub.org/publications/2538/?v=1

  7. Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3

    1. Viterbo University 2. Juniata College 3. Pennsylvania State University

    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    https://qubeshub.org/publications/1005/?v=1

  8. The ml4bio Workshop: Machine Learning Literacy for Biologists

    02 Jun 2019 | Teaching Materials | Contributor(s):

    By Fangzhou Mu1, Chris Magnano1, Debora Treu2, Anthony Gitter1

    1. University of Wisconsin - Madison 2. Morgridge Institute for Research

    Presentation on machine learning literacy for biologists at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1252/?v=1

  9. The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Elizabeth Dinsdale2, William Morgan3, Mark A. Pauley4, William Tapprich5, Eric Triplett6, Jason Williams7

    1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory

    The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.

    https://qubeshub.org/publications/1978/?v=1

  10. UniProt

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief description of UniProt and its databases and features

    https://qubeshub.org/publications/463/?v=1

  11. UNR Bioinformatics Videos

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Pedro Miura

    University of Nevada, Reno

    Two videos developed by Pedro Miura about bioinformatics at UNR

    https://qubeshub.org/publications/483/?v=1

  12. Using Bioinformatics and Molecular Visualization to Develop Student Hypotheses in a Malate Dehydrogenase Oriented CURE

    14 Jan 2022 | Teaching Materials | Contributor(s):

    By Kevin P Callahan1, Tamara Mans2, Jing Zhang3, Ellis Bell4, Jessica Bell*4

    1. St John Fisher College 2. North Hennepin Community College 3. University of Nebraska-Lincoln 4. University of San Diego

    Developing student creativity and ability to develop a testable hypothesis represents a significant challenge in most laboratory courses. This lesson demonstrates how students use facets of...

    https://qubeshub.org/publications/2782/?v=1

  13. Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tara Phelps-Durr

    Radford University

    This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.

    https://qubeshub.org/publications/1006/?v=1

  14. Using Jetstream for Bioinformatics

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).

    https://qubeshub.org/publications/478/?v=1

  15. Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein

    18 Mar 2022 | Teaching Materials | Contributor(s):

    By Laura L. Listenberger1, Cassandra M. Joiner1, Cassidy R. Terrell*2

    1. St. Olaf College 2. University of Minnesota

    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    https://qubeshub.org/publications/2862/?v=1

  16. Using Phyre2

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    https://qubeshub.org/publications/465/?v=1

  17. Using Synthetic Biology to Teach Data Science

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=2

  18. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=1

  19. Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes

    17 Dec 2022 | Teaching Materials | Contributor(s):

    By Miko Mallari1, Sheela Vemu2, Valerie Carson3, Golnar Afshar4, Alma Rodriguez Estrada5, Clifford Wilson6, Sandra Porter7

    1. City College of San Francisco 2. Waubonsee Community College 3. Hillsborough Community College 4. Skyline College 5. Aurora University 6. City Colleges of Chicago 7. Digital World Biology

    Research experiences provide a valuable view into the world of science and a great way to explore new fields and careers while developing critical thinking skills. The development and maintenance...

    https://qubeshub.org/publications/3595/?v=1

  20. Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Adam Idica1, Jordan Thompson1, Irene Munk Pedersen1, Pavan Kadandale1

    University of California, Irvine

    In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource

    https://qubeshub.org/publications/1007/?v=1

Close

Home

Search