Tags: bioinformatics

Resources (61-80 of 130)

  1. Java array and random number generator, hints

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    Java, UTC, Fall 2017

    https://qubeshub.org/publications/499/?v=1

  2. Java array demo, loop over assignment and print

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100, UTC, Fall 2017

    https://qubeshub.org/publications/497/?v=1

  3. Java for-loop, investment problem, with debug flag usage demo

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    https://qubeshub.org/publications/494/?v=1

  4. Java String array demo, switch two elements in an array

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100, UTC Fall 2017

    https://qubeshub.org/publications/498/?v=1

  5. Java String substring usage, initials

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100 Fall 2017, UTC. Big Java Chapter 4.

    https://qubeshub.org/publications/492/?v=1

  6. Java while loop demo, investment case

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    BigJava Chapter 6, UTC, CPSC1100 Fall 2017

    https://qubeshub.org/publications/493/?v=1

  7. LEAGSEA

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    https://qubeshub.org/publications/466/?v=1

  8. Making bioinformatics tools classroom-friendly

    23 Jul 2020 | Teaching Materials | Contributor(s):

    By Jason Williams, Wilson Leung1, Cornel Ghiban2

    1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory

    Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    https://qubeshub.org/publications/2000/?v=1

  9. Making toast: Using analogies to explore concepts in bioinformatics

    26 Aug 2021 | Teaching Materials | Contributor(s):

    By Kate L. Hertweck

    University of Texas at Tyler

    Contemporary biology is moving towards heavy reliance on computational methods to manage, find patterns, and derive meaning from large-scale data, such as genomic sequences. Biology teachers are...

    https://qubeshub.org/publications/2559/?v=1

  10. Making toast: Using analogies to explore concepts in bioinformatics

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Kate L. Hertweck

    University of Texas at Tyler

    Module using analogies to introduce students to genomics

    https://qubeshub.org/publications/1003/?v=1

  11. Mapping a Mutation to its Gene: The "Fly Lab" as a Modern Research Experience

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Derek M. Dean*1, David L. Deitcher2, David W. Loehlin1, Lois M. Banta1

    1. Williams College 2. Cornell University

    Although genetics is an invaluable part of the undergraduate biology curriculum, it can be intimidating to students as well as instructors: Students must reduce their reliance on memorization and...

    https://qubeshub.org/publications/2707/?v=1

  12. Maria vs Malaria

    02 Nov 2023 | Teaching Materials | Contributor(s):

    By Didem Vardar-Ulu1, Serena Yu1, Alicia Lau1, Molly Szpakowski1

    Boston University

    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria.

    https://qubeshub.org/publications/4551/?v=1

  13. Maria vs Malaria - AR Adaptation

    04 Nov 2023 | Teaching Materials | Contributor(s):

    By Didem Vardar-Ulu1, Saif Eldeen Ragab1, Swati Agrawal2

    1. Boston University, Chemistry Department 2. University of Mary Washington

    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria. Students will be able to view selected molecular views from the...

    https://qubeshub.org/publications/4554/?v=1

  14. Module 1: Introduction to the Genome Browser: What is a Gene?

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Joyce Stamm1, Jennifer Kennell2, Wilson Leung3, Leocadia Paliulis4, Srebrenka Robic5, Anne Rosenwald6

    1. University of Evansville 2. Vassar College 3. Washington University in St. Louis 4. Bucknell University 5. Agnes Scott College 6. Georgetown University

    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    https://qubeshub.org/publications/1989/?v=1

  15. Module 2: Transcription Part I: From DNA Sequence to Transcription Unit

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Santisteban1, Alexa Sawa2

    1. University of North Carolina - Pembroke 2. College of the Desert

    This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...

    https://qubeshub.org/publications/1990/?v=1

  16. Murder by HIV? Undergraduate edition

    14 Mar 2023 | Teaching Materials | Contributor(s):

    By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3

    1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University

    Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/publications/1004/?v=2

  17. Murder by HIV? Undergraduate edition

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3

    1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University

    Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/publications/1004/?v=1

  18. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/publications/464/?v=1

  19. Needleman - Wunsch Algorithm Exercise

    22 Apr 2020 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Neal Grandgenett, Bill Morgan3, Mark A. Pauley4, Elizabeth F Ryder5

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/publications/28/?v=4

  20. Needleman - Wunsch Algorithm Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/publications/28/?v=3