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Tags: bioinformatics

Teaching Materials (1-20 of 61)

  1. Interdisciplinary biology education: a holistic approach to an intractable problem

    21 May 2019 | Teaching Materials | Contributor(s):

    By Kristin Jenkins

    BioQUEST

    Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1208/?v=2

  2. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    21 May 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1212/?v=2

  3. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/qubesresources/publications/1219/?v=1

  4. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    15 May 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1212/?v=1

  5. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    15 May 2019 | Teaching Materials | Contributor(s):

    By Bill Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1210/?v=1

  6. Interdisciplinary biology education: a holistic approach to an intractable problem

    15 May 2019 | Teaching Materials | Contributor(s):

    By Kristin Jenkins

    BioQUEST

    Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1208/?v=1

  7. Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses

    02 May 2019 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=5

  8. NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources

    29 Mar 2019 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. NC State 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha

    Presentation given at GLBIO 2019 on NIBLSE Incubators

    https://qubeshub.org/qubesresources/publications/1116/?v=1

  9. Intro to Command Line Coding Genomics Analysis

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Ray A Enke1

    James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  10. Plasmodium Problem Space

    07 Jan 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.

    https://qubeshub.org/qubesresources/publications/1009/?v=1

  11. Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Adam Idica1, Jordan Thompson1, Irene Munk Pedersen1, Pavan Kadandale1

    University of California, Irvine

    In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource

    https://qubeshub.org/qubesresources/publications/1007/?v=1

  12. Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tara Phelps-Durr

    Radford University

    This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.

    https://qubeshub.org/qubesresources/publications/1006/?v=1

  13. Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3

    1. Viterbo University 2. Juniata College 3. Pennsylvania State University

    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    https://qubeshub.org/qubesresources/publications/1005/?v=1

  14. Murder by HIV? Undergraduate edition

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3

    1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University

    Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/qubesresources/publications/1004/?v=1

  15. Making toast: Using analogies to explore concepts in bioinformatics

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Kate L. Hertweck

    University of Texas at Tyler

    Module using analogies to introduce students to genomics

    https://qubeshub.org/qubesresources/publications/1003/?v=1

  16. Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Eric T. Holland1, Greg Manley1, Tamara Chiba1, Rona Ramos1, Simon Mochrie1, Jennifer Frederick1

    Yale University

    Lesson on what it means for biological processes to be Poissonian, published in CourseSource

    https://qubeshub.org/qubesresources/publications/1001/?v=1

  17. Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Kelsey Metzger

    University of Minnesota, Rochester

    In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic...

    https://qubeshub.org/qubesresources/publications/1000/?v=1

  18. A Hands-on Introduction to Hidden Markov Models

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2

    1. Truman State University 2. Washington University in St. Louis

    A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.

    https://qubeshub.org/qubesresources/publications/999/?v=1

  19. Genes and Civil Liberties

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Philip L. Bereano

    University of Washington, Seattle

    This lesson focuses on examining civil liberties issues as they relate to genetic research. Students can choose to represent an organization, real or fictional, that will report to a task force on...

    https://qubeshub.org/qubesresources/publications/998/?v=1

  20. Finding Selection in All the Right Places

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Juliet F. K. Noor, Mohamed A. F. Noor

    Lab introducing students to evolutionary genetics using bioinformatics and biocuration, published as GSA Learning Resource

    https://qubeshub.org/qubesresources/publications/994/?v=1