Teaching Materials (41-60 of 130)

1. Module 2: Transcription Part I: From DNA Sequence to Transcription Unit

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Maria Santisteban¹, Alexa Sawa²

   1. University of North Carolina - Pembroke 2. College of the Desert

   This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...

   https://qubeshub.org/publications/1990/?v=1

2. Module 1: Introduction to the Genome Browser: What is a Gene?

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Joyce Stamm¹, Jennifer Kennell², Wilson Leung³, Leocadia Paliulis⁴, Srebrenka Robic⁵, Anne Rosenwald⁶

   1. University of Evansville 2. Vassar College 3. Washington University in St. Louis 4. Bucknell University 5. Agnes Scott College 6. Georgetown University

   This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

   https://qubeshub.org/publications/1989/?v=1

3. GEA Introductory lesson on RNA-Seq

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Jason Williams¹, Judy Brusslan², Ray Enke³, Matthew Escobar⁴, Vince Buonaccorsi⁵

   1. Cold Spring Harbor Laboratory 2. California State University Long Beach 3. James Madison University 4. California State University San Marcos 5. Juniata College

   This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

   https://qubeshub.org/publications/1988/?v=1

4. GEA Introductory lesson on BLAST

   25 Jul 2020 | Teaching Materials | Contributor(s):

   By Justin DiAngelo¹, Alexis Nagengast², Wilson Leung³, Douglas L Chalker³

   1. Penn State Berks 2. Widener University 3. Washington University in St. Louis

   The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

   https://qubeshub.org/publications/1987/?v=1

5. Genome Solver: Building faculty skills in bioinformatics

   23 Jul 2020 | Teaching Materials | Contributor(s):

   By Vinayak Mathur¹, Gaurav Arora², Vinodh Ganesan³, Hita Gupta⁴, Mariana Kazarian⁵, Anne Rosenwald⁶

   1. Cabrini University 2. Gallaudet University 3. Temple University 4. Conestoga High School 5. Horace Mann School 6. Georgetown University

   Genome Solver (GS) began in 2011 as an NSF-funded project for faculty training in basic web-based bioinformatics skills.

   https://qubeshub.org/publications/1974/?v=1

6. Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource

   23 Jul 2020 | Teaching Materials | Contributor(s):

   By Adam Kleinschmit¹, Rachel Cook², Barbara Murdoch³, Elizabeth F Ryder⁴, William Tapprich⁵

   1. University of Dubuque 2. Fairmont State University 3. Eastern Connecticut State University 4. Worcester Polytechnic Institute 5. University of Nebraska-Omaha

   Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...

   https://qubeshub.org/publications/1975/?v=1

7. The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration

   23 Jul 2020 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Elizabeth Dinsdale², William Morgan³, Mark A. Pauley⁴, William Tapprich⁵, Eric Triplett⁶, Jason Williams⁷

   1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory

   The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.

   https://qubeshub.org/publications/1978/?v=1

8. Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education

   23 Jul 2020 | Teaching Materials | Contributor(s):

   By William Morgan¹, Sam S Donovan², Hayley Orndorf², Sabrina Robertson³, Elizabeth F Ryder⁴, Michael Sierk⁵, Anne Rosenwald⁶, Elizabeth Dinsdale⁷, Eric Triplett⁸, Mark Pauley⁹, William Tapprich¹⁰

   1. The College of Wooster 2. University of Pittsburgh 3. NC State 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. National Science Foundation 10. University of Nebraska-Omaha

   To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...

   https://qubeshub.org/publications/1979/?v=1

9. Making bioinformatics tools classroom-friendly

   23 Jul 2020 | Teaching Materials | Contributor(s):

   By Jason Williams, Wilson Leung¹, Cornel Ghiban²

   1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory

   Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

   https://qubeshub.org/publications/2000/?v=1

10. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    18 Jul 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=2

11. Yeti or not: Do they exist?

    14 May 2020 | Teaching Materials | Contributor(s):

    By Keith Johnson

    Bradley University College of Liberal Arts and Sciences

    Through this 2-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

    https://qubeshub.org/publications/1832/?v=1

12. Needleman - Wunsch Algorithm Exercise

    22 Apr 2020 | Teaching Materials | Contributor(s):

    By Michael Sierk¹, Sam S Donovan², Neal Grandgenett, Bill Morgan³, Mark A. Pauley⁴, Elizabeth F Ryder⁵

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/publications/28/?v=4

13. Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

    03 Apr 2020 | Teaching Materials | Contributor(s):

    By Maria Shumskaya¹, Nicholas Lorusso²

    1. Kean University 2. University of North Texas at Dallas

    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    https://qubeshub.org/publications/1796/?v=1

14. Population Demography in Swirl

    12 Feb 2020 | Teaching Materials | Contributor(s):

    By Emily Weigel

    Georgia Institute of Technology

    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

    https://qubeshub.org/publications/1214/?v=4

15. Population Demography in Swirl

    06 Nov 2019 | Teaching Materials | Contributor(s):

    By Emily Weigel

    Georgia Institute of Technology

    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

    https://qubeshub.org/publications/1214/?v=3

16. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

17. Population Demography in Swirl

    26 Sep 2019 | Teaching Materials | Contributor(s):

    By Emily Weigel

    Georgia Institute of Technology

    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

    https://qubeshub.org/publications/1214/?v=2

18. Using Synthetic Biology to Teach Data Science

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

    College of William and Mary

    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=2

19. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha¹, Beteel Abu-Ageel¹, Sanjana Challa¹, Xiangyi Fang¹, Chai Hibbert¹, Anna Isler¹, Elias Nafziger¹, Adam Oliver¹, Hanqiu Peng¹, Julia Urban¹, Vivian Zhu¹

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/publications/1326/?v=1

20. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By William Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/publications/1210/?v=2