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Tags: bioinformatics

Teaching Materials (61-79 of 79)

  1. Using Phyre2

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    https://qubeshub.org/qubesresources/publications/465/?v=1

  2. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/qubesresources/publications/464/?v=1

  3. UniProt

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief description of UniProt and its databases and features

    https://qubeshub.org/qubesresources/publications/463/?v=1

  4. GSEAtheory

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief introduction to how gene set enrichment analysis works.

    https://qubeshub.org/qubesresources/publications/462/?v=1

  5. Simple Heat Maps with Morpheus

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    https://qubeshub.org/qubesresources/publications/461/?v=1

  6. What is bioinformatics?

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Short description of what bioinformatics is, it's potential applications, and what it is not.

    https://qubeshub.org/qubesresources/publications/460/?v=1

  7. Development of the NIBLSE Learning Resource Collection and Incubators

    16 Mar 2018 | Teaching Materials | Contributor(s):

    By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10

    1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha

    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    https://qubeshub.org/qubesresources/publications/413/?v=1

  8. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/qubesresources/publications/118/?v=3

  9. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/qubesresources/publications/164/?v=2

  10. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  11. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=3

  12. Wolf Sheep Predation Simulation Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/qubesresources/publications/29/?v=2

  13. Bioinformatics - Investigating Sequence Similarity

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=2

  14. Exploring HIV Evolution

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Sam S Donovan1, Tony Weisstein2

    1. University of Pittsburgh 2. Truman State University

    In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...

    https://qubeshub.org/qubesresources/publications/24/?v=2

  15. Needleman - Wunsch Algorithm Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=3

  16. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1

  17. Needleman - Wunsch Algorithm Exercise

    13 Oct 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Neal Grandgenett, Bill Morgan3, Mark A. Pauley4, Elizabeth Ryder5

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=2

  18. Needleman - Wunsch Algorithm Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=1

  19. Wolf Sheep Predation Simulation Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/qubesresources/publications/29/?v=1