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A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
28 Feb 2019 | Teaching Materials | Contributor(s):
A Hands-on Introduction to Hidden Markov Models
04 Jan 2019 | Teaching Materials | Contributor(s):
By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2
1. Truman State University 2. Washington University in St. Louis
A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.
Aging and Circular RNAs
13 Apr 2018 | Teaching Materials | Contributor(s):
By Pedro Miura
University of Nevada, Reno
A science FIT seminar presented to incoming freshmen at UNR
An Introduction to the R Programming Environment
By K. A. Garrett1, P. D. Esker1, A. H. Sparks1
Kansas State University
An online module introducing students and biologists to R, published in American Phytopathological Society
Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies
03 Jan 2019 | Teaching Materials | Contributor(s):
By Craig E. Stanley, Jr., Charles Hadley S. King, IV, Michelle Thornton, Rob J. Kulathinal
Introductory genetics laboratory published as GSA Learning Resource
Bioinformatics - Investigating Sequence Similarity
04 Dec 2018 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
05 Jul 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5
1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State
05 Jun 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3
1. Adams State University 2. Hampshire College 3. Alabama State University
31 Jan 2017 | Teaching Materials | Contributor(s):
Bioinformatics / Neuroinformatics
By William Grisham
University of California, Los Angeles
This module is a computer-based introduction to bioinformatics resources. This easy-to-adopt module weaves together several important bioinformatic tools so students can grasp how each is used in...
Bioinformatics: CpG Islands
17 Oct 2017 | Teaching Materials | Contributor(s):
By Edward Himelblau
California Polytechnic State University
This is an introductory bioinformatics exercise intended for use in a genetics course.
Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
29 May 2019 | Teaching Materials | Contributor(s):
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...
BSL-4: Authorized Personnel Only
24 Sep 2018 | Teaching Materials | Contributor(s):
By Nicole Anthony
Biological Sciences, Toronto District School Board
National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection
Colon Cancer: A Case of Genetic Bad Luck
By Anne M. Casper
Eastern Michigan University
Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science
Complete Set of Lessons
23 Oct 2019 | Teaching Materials | Contributor(s):
By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3
1. Georgetown University 2. Gallaudet University 3. Cabrini University
The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...
01 Nov 2018 | Teaching Materials | Contributor(s):
Declare and intialize arrays in Java
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Development of the NIBLSE Learning Resource Collection and Incubators
16 Mar 2018 | Teaching Materials | Contributor(s):
By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10
1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha
Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces
DNA Subway Learning Resources
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.