Support

Support Options

  • Knowledge Base

    Find information on common questions and issues.

  • Support Messages

    Check on the status of your correspondences with members of the QUBES team.

Contact Us

About you
About the problem

Tags: bioinformatics

Teaching Materials (1-20 of 48)

  1. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  2. Assessment

    03 Oct 2018 | Teaching Materials | Contributor(s):

    By Arietta Fleming-Davies1, Jeremy M Wojdak2

    1. University of San Diego 2. Radford University

    This can be given at the beginning and end of the BIOMAAP program, in order to measure student changes in math anxiety.

    https://qubeshub.org/qubesresources/publications/617/?v=1

  3. Biodiversity Literacy in Undergraduate Education (BLUE): Building standards and resources for using collections data in the classroom

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Molly Phillips1, Debra Linton2, Libby Ellwood3, Natalie Douglas2, Lisa White4, Anna Monfils2

    1. iDigBio, Florida Museum of Natural History, University of Florida 2. Central Michigan University 3. La Brea Tar Pits and Museum, Natural History Museum of Los Angeles County 4. University of California Museum of Paleontology, UC Berkeley

    Abstract for poster on using collections data presented at the 2019 BioQUEST & QUBES Summer Workshop

    https://qubeshub.org/qubesresources/publications/1324/?v=1

  4. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1

  5. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  6. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1

  7. BSL-4: Authorized Personnel Only

    24 Sep 2018 | Teaching Materials | Contributor(s):

    By Nicole Anthony

    Biological Sciences, Toronto District School Board

    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    https://qubeshub.org/qubesresources/publications/795/?v=1

  8. Cystic Fibrosis Mechanism and Treatment

    01 Jul 2019 | Teaching Materials | Contributor(s):

    By HHMI BioInteractive

    This animation shows how mutations in an ion channel protein lead to the genetic disease cystic fibrosis. The animation also discusses how research on this protein has been used to develop...

    https://qubeshub.org/qubesresources/publications/1337/?v=1

  9. Declare and intialize arrays in Java

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    UTC, CPSC1100

    https://qubeshub.org/qubesresources/publications/496/?v=1

  10. Developing Quantitative Skills Using HHMI BioInteractive Resources

    24 Feb 2019 | Teaching Materials | Contributor(s):

    By Robin Bulleri1, Kristine Grayson2, Melissa Csikari3

    1. Carrboro High School 2. University of Richmond 3. Howard Hughes Medical Institute

    A workshop on using HHMI BioInteractive data activities to teach science content and quantitative skills

    https://qubeshub.org/qubesresources/publications/1090/?v=1

  11. Drug screening and cancer resistance: EGFR Activity

    25 Jul 2018 | Teaching Materials | Contributor(s):

    By Holly Basta

    Rock Mountain College

    This activity explores a specific gene (egfr) and its role in cancer. EGFR was introduced with the Gene Card Activities, researched throughout the semester, and then authentic image data of...

    https://qubeshub.org/qubesresources/publications/720/?v=1

  12. Environmental Drivers of Ecosystem Carbon Fluxes from Minutes to Years

    11 Jun 2018 | Teaching Materials | Contributor(s):

    By Christopher Gough1, Cindee Giffen2, Thomas W Woodward1

    1. Virginia Commonwealth University 2. University of Michigan

    Students build on fundamental concepts of ecosystem production and carbon cycling, combining this knowledge with open long-term data from ecological and meteorological networks to uncover the...

    https://qubeshub.org/qubesresources/publications/571/?v=1

  13. Expanding Undergraduate Participation in Computational Biology: Resources and Lessons Learned from a Hands-on Workshop

    05 Jun 2019 | Teaching Materials | Contributor(s):

    By Layla Oesper

    Carleton College

    Presentation on computational biology in undergraduate education at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1283/?v=1

  14. Exploration of the Human Genome by Investigation of Personalized SNPs

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Lani C. Keller

    Quinnipiac University

    To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...

    https://qubeshub.org/qubesresources/publications/993/?v=1

  15. Exploring how climate will impact plant-insect distributions and interactions using open data and informatics

    06 Jun 2019 | Teaching Materials | Contributor(s):

    By Wendy Clement1, Kathleen Prudic2, Jeffrey Oliver3

    1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries

    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    https://qubeshub.org/qubesresources/publications/1286/?v=1

  16. Fantastic Birds and Where to Find Them

    20 Mar 2019 | Teaching Materials | Contributor(s):

    By Molly Phillips1, Kathryn Green2

    1. iDigBio, Florida Museum of Natural History, University of Florida 2. North Carolina Sate University

    5E lesson plan for middle/high school aligned to NGSS standards.

    https://qubeshub.org/qubesresources/publications/1109/?v=1

  17. Finding Selection in All the Right Places

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Juliet F. K. Noor, Mohamed A. F. Noor

    Lab introducing students to evolutionary genetics using bioinformatics and biocuration, published as GSA Learning Resource

    https://qubeshub.org/qubesresources/publications/994/?v=1

  18. Gaining familiarity with R and Work with NEON OS & IS data – Plant phenology & temperature - adaptation

    11 Jun 2018 | Teaching Materials | Contributor(s):

    By Nancy Cowden

    Lynchburg College

    This adaptation introduces students to R and the NEON OS & IS data – Plant Phenology & Temperature tutorial. A planned extension will prompt students to develop a testable hypothesis, based on...

    https://qubeshub.org/qubesresources/publications/624/?v=1

  19. Genes and Civil Liberties

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Philip L. Bereano

    University of Washington, Seattle

    This lesson focuses on examining civil liberties issues as they relate to genetic research. Students can choose to represent an organization, real or fictional, that will report to a task force on...

    https://qubeshub.org/qubesresources/publications/998/?v=1

  20. Geoscience Methods and Resources for K-5 Pre-Education Majors

    28 May 2018 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    : Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...

    https://qubeshub.org/qubesresources/publications/572/?v=1