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Tags: bioinformatics

Teaching Materials (21-40 of 66)

  1. GSEAtheory

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief introduction to how gene set enrichment analysis works.

    https://qubeshub.org/qubesresources/publications/462/?v=1

  2. Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Kelsey Metzger

    University of Minnesota, Rochester

    In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic...

    https://qubeshub.org/qubesresources/publications/1000/?v=1

  3. How do we do Bioinformatics?

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    https://qubeshub.org/qubesresources/publications/477/?v=1

  4. How to Use BLASTP NCBI

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

    https://qubeshub.org/qubesresources/publications/468/?v=1

  5. Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Eric T. Holland1, Greg Manley1, Tamara Chiba1, Rona Ramos1, Simon Mochrie1, Jennifer Frederick1

    Yale University

    Lesson on what it means for biological processes to be Poissonian, published in CourseSource

    https://qubeshub.org/qubesresources/publications/1001/?v=1

  6. Interdisciplinary biology education: a holistic approach to an intractable problem

    21 May 2019 | Teaching Materials | Contributor(s):

    By Kristin Jenkins

    BioQUEST

    Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1208/?v=2

  7. Interdisciplinary biology education: a holistic approach to an intractable problem

    15 May 2019 | Teaching Materials | Contributor(s):

    By Kristin Jenkins

    BioQUEST

    Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1208/?v=1

  8. Java array and random number generator, hints

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    Java, UTC, Fall 2017

    https://qubeshub.org/qubesresources/publications/499/?v=1

  9. Java array demo, loop over assignment and print

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100, UTC, Fall 2017

    https://qubeshub.org/qubesresources/publications/497/?v=1

  10. Java for-loop, investment problem, with debug flag usage demo

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    https://qubeshub.org/qubesresources/publications/494/?v=1

  11. Java String array demo, switch two elements in an array

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100, UTC Fall 2017

    https://qubeshub.org/qubesresources/publications/498/?v=1

  12. Java String substring usage, initials

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    CPSC1100 Fall 2017, UTC. Big Java Chapter 4.

    https://qubeshub.org/qubesresources/publications/492/?v=1

  13. Java while loop demo, investment case

    16 Apr 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    Spelman College

    BigJava Chapter 6, UTC, CPSC1100 Fall 2017

    https://qubeshub.org/qubesresources/publications/493/?v=1

  14. LEAGSEA

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    https://qubeshub.org/qubesresources/publications/466/?v=1

  15. Making toast: Using analogies to explore concepts in bioinformatics

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Kate L. Hertweck

    University of Texas at Tyler

    Module using analogies to introduce students to genomics

    https://qubeshub.org/qubesresources/publications/1003/?v=1

  16. Murder by HIV? Undergraduate edition

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3

    1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University

    Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/qubesresources/publications/1004/?v=1

  17. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/qubesresources/publications/464/?v=1

  18. Needleman - Wunsch Algorithm Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=3

  19. Needleman - Wunsch Algorithm Exercise

    13 Oct 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk1, Sam S Donovan2, Neal Grandgenett, Bill Morgan3, Mark A. Pauley4, Elizabeth Ryder5

    1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. Worcester Polytechnic Institute

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=2

  20. Needleman - Wunsch Algorithm Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=1