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Tags: bioinformatics

Teaching Materials (41-60 of 66)

  1. Aging and Circular RNAs

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Pedro Miura

    University of Nevada, Reno

    A science FIT seminar presented to incoming freshmen at UNR

    https://qubeshub.org/qubesresources/publications/480/?v=1

  2. Screen Casts for Foundations of Bioinformatics at UCSD

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

    https://qubeshub.org/qubesresources/publications/479/?v=1

  3. Using Jetstream for Bioinformatics

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    A pre-class screencast for UCSD’s Foundations of Bioinformatics course (BGGN-213).

    https://qubeshub.org/qubesresources/publications/478/?v=1

  4. How do we do Bioinformatics?

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    https://qubeshub.org/qubesresources/publications/477/?v=1

  5. What is Bioinformatics?

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    https://qubeshub.org/qubesresources/publications/476/?v=1

  6. Foundations of Bioinformatics (BGGN-213)

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    https://qubeshub.org/qubesresources/publications/475/?v=1

  7. Video Tutorials for Computational Genomics

    12 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.

    https://qubeshub.org/qubesresources/publications/472/?v=1

  8. How to Use BLASTP NCBI

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

    https://qubeshub.org/qubesresources/publications/468/?v=1

  9. ProteinPhysiochemistry

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    https://qubeshub.org/qubesresources/publications/467/?v=1

  10. LEAGSEA

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    https://qubeshub.org/qubesresources/publications/466/?v=1

  11. Using Phyre2

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    https://qubeshub.org/qubesresources/publications/465/?v=1

  12. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/qubesresources/publications/464/?v=1

  13. UniProt

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief description of UniProt and its databases and features

    https://qubeshub.org/qubesresources/publications/463/?v=1

  14. GSEAtheory

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief introduction to how gene set enrichment analysis works.

    https://qubeshub.org/qubesresources/publications/462/?v=1

  15. Simple Heat Maps with Morpheus

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    https://qubeshub.org/qubesresources/publications/461/?v=1

  16. What is bioinformatics?

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Short description of what bioinformatics is, it's potential applications, and what it is not.

    https://qubeshub.org/qubesresources/publications/460/?v=1

  17. Development of the NIBLSE Learning Resource Collection and Incubators

    16 Mar 2018 | Teaching Materials | Contributor(s):

    By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10

    1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha

    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    https://qubeshub.org/qubesresources/publications/413/?v=1

  18. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  19. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=3

  20. Wolf Sheep Predation Simulation Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/qubesresources/publications/29/?v=2