Tags: bioinformatics

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  1. Using Bioinformatics and Molecular Visualization to Develop Student Hypotheses in a Malate Dehydrogenase Oriented CURE

    14 Jan 2022 | Teaching Materials | Contributor(s):

    By Kevin P Callahan1, Tamara Mans2, Jing Zhang3, Ellis Bell4, Jessica Bell*4

    1. St John Fisher College 2. North Hennepin Community College 3. University of Nebraska-Lincoln 4. University of San Diego

    Developing student creativity and ability to develop a testable hypothesis represents a significant challenge in most laboratory courses. This lesson demonstrates how students use facets of...

    https://qubeshub.org/publications/2782/?v=1

  2. Maura Pavao

    https://qubeshub.org/community/members/25717

  3. Juliana Aparecida Santos

    https://qubeshub.org/community/members/25248

  4. A 360˚ View of COVID-19

    30 Nov 2021 | Teaching Materials | Contributor(s):

    By Nikolaos Tsotakos1, Victoria Del Gaizo Moore2, Lisa Z. Scheifele3, Michael J. Wolyniak4, Joseph W. Chihade5, Joseph J. Provost6, Jennifer A. Roecklein-Canfield*7

    1. Penn State Harrisburg 2. Elon University 3. Loyola University Maryland 4. Hampden-Sydney College 5. Carleton College 6. University of San Diego 7. Simmons University

    In March 2020, institutions underwent a massive transition to distance learning as a result of the COVID-19 pandemic. With so little time to devise new materials to maximize learning in the new...

    https://qubeshub.org/publications/2790/?v=1

  5. Wenxiang 3.0

    30 Nov 2021 | Teaching Materials | Contributor(s):

    By John R. Jungck1, Metehan Cebeci2

    1. Interdisciplinary Science Learning Center at the University of Delaware 2. University of Delaware

    Wenxiang diagrams illustrate protein helices as spirals on a plane and thus have the advantage overhelical wheels of being planar graphs. Wenxiang 3.0 extends the original version by adding...

    https://qubeshub.org/publications/2803/?v=1

  6. Mindy Wilson

    https://qubeshub.org/community/members/24953

  7. Joshua Thomas Cooper

    https://qubeshub.org/community/members/24435

  8. Andrew Colasanti

    https://qubeshub.org/community/members/24180

  9. Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson

    24 Sep 2021 | Teaching Materials | Contributor(s):

    By Leigh Ann Samsa*1, Melissa Eslinger2, Adam Kleinschmit3, Amanda Solem4, Carlos C. Goller*1

    1. North Carolina State University 2. United States Military Academy 3. University of Dubuque 4. Hastings College

    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...

    https://qubeshub.org/publications/2753/?v=1

  10. Renato Augusto Corrêa dos Santos

    https://qubeshub.org/community/members/23792

  11. A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics

    15 Sep 2021 | Teaching Materials | Contributor(s):

    By Sophie K. Jurgensen1, Joseph Harsh2, James B. Herrick*2

    1. James Madison University, Louisiana State University 2. James Madison University

    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    https://qubeshub.org/publications/2749/?v=1

  12. Sandra Porter

    https://qubeshub.org/community/members/23608

  13. Babar Usman

    https://qubeshub.org/community/members/23464

  14. Virginia McDonough

    https://qubeshub.org/community/members/23353

  15. An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure

    31 Aug 2021 | Teaching Materials | Contributor(s):

    By Meg M. Laakso1, Leocadia V. Paliulis2, Paula Croonquist3, Brianna Derr2, Elena Gracheva4, Charles Hauser5, Carina Howell6, Christopher Jones7, Jacob D. Kagey8, Jennifer Kennell9, S. Catherine Silver Key10, Hemlata Mistry11, Srebrenka Robic12, Jamie Sanford13, Marisol Santisteban14, Chiyedza Small15, Rebecca Spokony16, Joyce Stamm17, Melanie Van Stry18, Wilson Leung4, Sarah C.R. Elgin4

    1. Eastern University 2. Bucknell University 3. Anoka-Ramsey Community College 4. Washington University in St. Louis 5. St. Edward’s University 6. Lock Haven University 7. Moravian College 8. University of Detroit Mercy 9. Vassar College 10. North Carolina Central University 11. Widener University 12. Agnes Scott College 13. Ohio Northern University 14. The University of North Carolina at Pembroke 15. Medgar Evers College, The City University of New York 16. Baruch College, The City University of New York 17. University of Evansville 18. Lane College

    Gene structure, transcription, translation, and alternative splicing are challenging concepts for many undergraduates studying biology. These topics are typically covered in a traditional lecture...

    https://qubeshub.org/publications/2592/?v=1

  16. A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Rachael M. St. Jacques †1, William M. Maza †1, Sabrina D. Robertson2, Andrew Lonsdale3, Caylin S. Murray1, Jason J. Williams4, Ray A. Enke*1

    1. James Madison University 2. University of North Carolina Chapel Hill 3. University of Melbourne 4. Cold Spring Harbor Laboratory, DNA Learning Center

    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    https://qubeshub.org/publications/2727/?v=1

  17. Mapping a Mutation to its Gene: The "Fly Lab" as a Modern Research Experience

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Derek M. Dean*1, David L. Deitcher2, David W. Loehlin1, Lois M. Banta1

    1. Williams College 2. Cornell University

    Although genetics is an invaluable part of the undergraduate biology curriculum, it can be intimidating to students as well as instructors: Students must reduce their reliance on memorization and...

    https://qubeshub.org/publications/2707/?v=1

  18. A CRISPR/Cas Guide RNA Design In Silico Activity

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Leigh Ann Samsa*1, Linnea Andersen1, Adam Groth1, Carlos Goller1

    North Carolina State University

    CRISPR biotechnologies inspired by the Clustered Regularly Interspaced Short Palindromic Repeat RNA-guided nuclease adaptive bacterial immune system have revolutionized biology research and become...

    https://qubeshub.org/publications/2701/?v=1

  19. DNA Detective: Genotype to Phenotype. A Bioinformatics Workshop for Middle School to College.

    29 Aug 2021 | Teaching Materials | Contributor(s):

    By Anne L. Sternberger*1, Sarah E. Wyatt1

    Ohio University

    Advances in high-throughput techniques have resulted in a rising demand for scientists with basic bioinformatics skills as well as workshops and curricula that teach students bioinformatics...

    https://qubeshub.org/publications/2652/?v=1

  20. CRISPR/Cas9 in yeast: a multi-week laboratory exercise for undergraduate students

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Randi J Ulbricht*

    Missouri State University

    Providing undergraduate life-science students with a course-based research experience that utilizes cutting-edge technology, is tractable for students, and is manageable as an instructor is a...

    https://qubeshub.org/publications/2635/?v=1