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Tags: bioinformatics

All Categories (101-120 of 156)

  1. How do we do Bioinformatics?

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    https://qubeshub.org/qubesresources/publications/477/?v=1

  2. What is Bioinformatics?

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    https://qubeshub.org/qubesresources/publications/476/?v=1

  3. Foundations of Bioinformatics (BGGN-213)

    13 Apr 2018 | Teaching Materials | Contributor(s):

    By Barry Grant

    University of California - San Diego

    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    https://qubeshub.org/qubesresources/publications/475/?v=1

  4. Video Tutorials for Computational Genomics

    12 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.

    https://qubeshub.org/qubesresources/publications/472/?v=1

  5. How to Use BLASTP NCBI

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.

    https://qubeshub.org/qubesresources/publications/468/?v=1

  6. ProteinPhysiochemistry

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    https://qubeshub.org/qubesresources/publications/467/?v=1

  7. LEAGSEA

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    https://qubeshub.org/qubesresources/publications/466/?v=1

  8. Using Phyre2

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    https://qubeshub.org/qubesresources/publications/465/?v=1

  9. NCBI Overview

    11 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    An overview of some of the databases within NCBI and how to get FASTA sequences.

    https://qubeshub.org/qubesresources/publications/464/?v=1

  10. UniProt

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief description of UniProt and its databases and features

    https://qubeshub.org/qubesresources/publications/463/?v=1

  11. GSEAtheory

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Brief introduction to how gene set enrichment analysis works.

    https://qubeshub.org/qubesresources/publications/462/?v=1

  12. Simple Heat Maps with Morpheus

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    https://qubeshub.org/qubesresources/publications/461/?v=1

  13. What is bioinformatics?

    10 Apr 2018 | Teaching Materials | Contributor(s):

    By Laura Harris

    Davenport University

    Short description of what bioinformatics is, it's potential applications, and what it is not.

    https://qubeshub.org/qubesresources/publications/460/?v=1

  14. Development of the NIBLSE Learning Resource Collection and Incubators

    16 Mar 2018 | Teaching Materials | Contributor(s):

    By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10

    1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha

    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    https://qubeshub.org/qubesresources/publications/413/?v=1

  15. Matt Young

    https://qubeshub.org/community/members/7380

  16. Michael William Mangan

    https://qubeshub.org/community/members/6933

  17. RNAseq data analysis using Galaxy

    13 Nov 2017 | Teaching Materials | Contributor(s):

    By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5

    1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University

    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    https://qubeshub.org/qubesresources/publications/118/?v=3

  18. Nhan Do Minh Nguyen

    https://qubeshub.org/community/members/6675

  19. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/qubesresources/publications/164/?v=2

  20. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1