Find information on common questions and issues.
Check on the status of your correspondences with members of the QUBES team.
How do we do Bioinformatics?
13 Apr 2018 | Teaching Materials | Contributor(s):
By Barry Grant
University of California - San Diego
A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/
What is Bioinformatics?
This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...
Foundations of Bioinformatics (BGGN-213)
This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
Video Tutorials for Computational Genomics
12 Apr 2018 | Teaching Materials | Contributor(s):
By Laura Harris
YouTube videos by Laura Harris on a variety of genomics and bioinformatics topics.
How to Use BLASTP NCBI
11 Apr 2018 | Teaching Materials | Contributor(s):
A walk through on how to find protein sequences and use BLASTP and PSI-BLAST in NCBI.
How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.
How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute
How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).
An overview of some of the databases within NCBI and how to get FASTA sequences.
10 Apr 2018 | Teaching Materials | Contributor(s):
Brief description of UniProt and its databases and features
Brief introduction to how gene set enrichment analysis works.
Simple Heat Maps with Morpheus
Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.
What is bioinformatics?
Short description of what bioinformatics is, it's potential applications, and what it is not.
Development of the NIBLSE Learning Resource Collection and Incubators
16 Mar 2018 | Teaching Materials | Contributor(s):
By Bill Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth Ryder4, Michael Sierk5, Anne Rosenwald6, Liz Dinsdale7, Eric Triplett8, Mark A. Pauley9, William Tapprich10
1. The College of Wooster 2. University of Pittsburgh 3. North Carolina State University 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. University of Nebraska at Omaha 10. University of Nebraska - Omaha
Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces
Michael William Mangan
RNAseq data analysis using Galaxy
13 Nov 2017 | Teaching Materials | Contributor(s):
By Matthew Escobar1, Sam S Donovan2, Irina Makarevitch3, Bill Morgan4, Sabrina Robertson5
1. California State University San Marcos 2. University of Pittsburgh 3. Hamline University 4. The College of Wooster 5. North Carolina State University
This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.
Nhan Do Minh Nguyen
DNA Subway Learning Resources
18 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
DNA Learning Center
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
Bioinformatics: CpG Islands
17 Oct 2017 | Teaching Materials | Contributor(s):
By Edward Himelblau
California Polytechnic State University
This is an introductory bioinformatics exercise intended for use in a genetics course.