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Jonathan Joel Lozada Pérez
https://qubeshub.org/community/members/11500
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NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
29 Mar 2019 | Teaching Materials | Contributor(s):
By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7
1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. NC State 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha
Presentation given at GLBIO 2019 on NIBLSE Incubators
https://qubeshub.org/publications/1116/?v=1
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A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
28 Feb 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
https://qubeshub.org/publications/1092/?v=1
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Mao-Lun Weng
https://qubeshub.org/community/members/10881
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Chenglin Chai
https://qubeshub.org/community/members/10465
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Plasmodium Problem Space
07 Jan 2019 | Teaching Materials | Contributor(s):
By Sam S Donovan
University of Pittsburgh
This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.
https://qubeshub.org/publications/1009/?v=1
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Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
04 Jan 2019 | Teaching Materials | Contributor(s):
By Adam Idica1, Jordan Thompson1, Irene Munk Pedersen1, Pavan Kadandale1
University of California, Irvine
In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource
https://qubeshub.org/publications/1007/?v=1
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Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes
04 Jan 2019 | Teaching Materials | Contributor(s):
By Tara Phelps-Durr
Radford University
This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.
https://qubeshub.org/publications/1006/?v=1
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Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
04 Jan 2019 | Teaching Materials | Contributor(s):
By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3
1. Viterbo University 2. Juniata College 3. Pennsylvania State University
This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...
https://qubeshub.org/publications/1005/?v=1
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Murder by HIV? Undergraduate edition
04 Jan 2019 | Teaching Materials | Contributor(s):
By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3
1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University
Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science
https://qubeshub.org/publications/1004/?v=1
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Making toast: Using analogies to explore concepts in bioinformatics
04 Jan 2019 | Teaching Materials | Contributor(s):
By Kate L. Hertweck
University of Texas at Tyler
Module using analogies to introduce students to genomics
https://qubeshub.org/publications/1003/?v=1
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An Introduction to the R Programming Environment
04 Jan 2019 | Teaching Materials | Contributor(s):
By K. A. Garrett1, P. D. Esker1, A. H. Sparks1
Kansas State University
An online module introducing students and biologists to R, published in American Phytopathological Society
https://qubeshub.org/publications/1002/?v=1
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Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
04 Jan 2019 | Teaching Materials | Contributor(s):
By Eric T. Holland1, Greg Manley1, Tamara Chiba1, Rona Ramos1, Simon Mochrie1, Jennifer Frederick1
Yale University
Lesson on what it means for biological processes to be Poissonian, published in CourseSource
https://qubeshub.org/publications/1001/?v=1
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Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches
04 Jan 2019 | Teaching Materials | Contributor(s):
By Kelsey Metzger
University of Minnesota, Rochester
In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic...
https://qubeshub.org/publications/1000/?v=1
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A Hands-on Introduction to Hidden Markov Models
04 Jan 2019 | Teaching Materials | Contributor(s):
By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2
1. Truman State University 2. Washington University in St. Louis
A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.
https://qubeshub.org/publications/999/?v=1
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Finding Selection in All the Right Places
03 Jan 2019 | Teaching Materials | Contributor(s):
By Juliet F. K. Noor, Mohamed A. F. Noor
Lab introducing students to evolutionary genetics using bioinformatics and biocuration, published as GSA Learning Resource
https://qubeshub.org/publications/994/?v=1
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Exploration of the Human Genome by Investigation of Personalized SNPs
03 Jan 2019 | Teaching Materials | Contributor(s):
By Lani C. Keller
Quinnipiac University
To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...
https://qubeshub.org/publications/993/?v=1
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Colon Cancer: A Case of Genetic Bad Luck
03 Jan 2019 | Teaching Materials | Contributor(s):
By Anne M. Casper
Eastern Michigan University
Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science
https://qubeshub.org/publications/992/?v=1
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Bioinformatics / Neuroinformatics
03 Jan 2019 | Teaching Materials | Contributor(s):
By William Grisham
University of California, Los Angeles
This module is a computer-based introduction to bioinformatics resources. This easy-to-adopt module weaves together several important bioinformatic tools so students can grasp how each is used in...
https://qubeshub.org/publications/990/?v=1
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Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies
03 Jan 2019 | Teaching Materials | Contributor(s):
By Craig E. Stanley, Jr., Charles Hadley S. King, IV, Michelle Thornton, Rob J. Kulathinal
Introductory genetics laboratory published as GSA Learning Resource
https://qubeshub.org/publications/988/?v=1