Resources (1-20 of 34)

1. Advances in Genome Sequencing with Nathan Olson

   25 Apr 2022 | Teaching Materials | Contributor(s):

   By Nathan Olson¹, Megan Seifert²

   1. National Institute of Standards and Technology 2. Headwaters Science Institute

   In this Lunch with a Scientist episode, we discuss Genome Sequencing and Bioinformatics with National Institute of Standards and Technology (NIST) biologist Nate Olson, Ph.D.

   https://qubeshub.org/publications/2937/?v=1

2. Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens

   10 Feb 2022 | Teaching Materials | Contributor(s):

   By Nicholas Lorusso¹, Maria Shumskaya², Denise Gemmellaro²

   1. University of North Texas at Dallas 2. Kean University

   This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

   https://qubeshub.org/publications/2567/?v=2

3. Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens

   30 Aug 2021 | Teaching Materials | Contributor(s):

   By Nicholas Lorusso¹, Denise Gemmellaro²

   1. University of North Texas at Dallas 2. Kean University

   This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

   https://qubeshub.org/publications/2567/?v=1

4. BLAST Exercises for Analyzing Cloning Results

   09 Jan 2020 | Teaching Materials | Contributor(s):

   By Erin R. Morris

   Baker University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

   https://qubeshub.org/publications/1734/?v=1

5. Build Multiomic and Visualization Skills in Bioscience Lecture

   19 Nov 2022 | Teaching Materials | Contributor(s):

   By Xyanthine Parillon

   student

   This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...

   https://qubeshub.org/publications/3574/?v=1

6. Complete Set of Lessons

   01 Nov 2018 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

   https://qubeshub.org/publications/860/?v=1

7. Databases: A Study of Influenza

   09 Jan 2020 | Teaching Materials | Contributor(s):

   By Selene Nikaido

   University of Central Missouri

   This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

   https://qubeshub.org/publications/1642/?v=1

8. Exploring the evolution of caffeine biosynthesis enzymes

   22 Jan 2020 | Teaching Materials | Contributor(s):

   By Shuchismita Dutta

   RCSB Protein Data Bank, Rutgers University

   Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

   https://qubeshub.org/publications/1723/?v=1

9. Genome Sequence Data in R using Biostrings (Swirl Lesson)

   09 Jun 2020 | Teaching Materials | Contributor(s):

   By Robert E Furrow

   University of California, Davis

   By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

   https://qubeshub.org/publications/1898/?v=1

10. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

11. Introduction to Genome Annotation

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    https://qubeshub.org/publications/1560/?v=1

12. Lesson I - Introduction to Genome Solver

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.

    https://qubeshub.org/publications/808/?v=1

13. Lesson II - Databases

    30 Sep 2022 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

    https://qubeshub.org/publications/855/?v=3

14. Lesson II - Databases

    30 Sep 2022 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

    https://qubeshub.org/publications/855/?v=2

15. Lesson II - Databases

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

    https://qubeshub.org/publications/855/?v=1

16. Lesson III - Annotation

    30 Sep 2022 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=4

17. Lesson III - Annotation

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=3

18. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=2

19. Lesson III - Annotation

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=1

20. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=2