Resources (1-20 of 28)

1. BLAST Exercises for Analyzing Cloning Results

   09 Jan 2020 | Teaching Materials | Contributor(s):

   By Erin R. Morris

   Baker University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

   https://qubeshub.org/publications/1734/?v=1

2. Complete Set of Lessons

   01 Nov 2018 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

   https://qubeshub.org/publications/860/?v=1

3. Databases: A Study of Influenza

   09 Jan 2020 | Teaching Materials | Contributor(s):

   By Selene Nikaido

   University of Central Missouri

   This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

   https://qubeshub.org/publications/1642/?v=1

4. Exploring the evolution of caffeine biosynthesis enzymes

   22 Jan 2020 | Teaching Materials | Contributor(s):

   By Shuchismita Dutta

   RCSB Protein Data Bank, Rutgers University

   Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

   https://qubeshub.org/publications/1723/?v=1

5. Genome Solver: Complete Set of Lessons

   23 Oct 2019 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

   https://qubeshub.org/publications/860/?v=2

6. Introduction to Genome Annotation

   09 Jan 2020 | Teaching Materials | Contributor(s):

   By Selene Nikaido

   University of Central Missouri

   This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

   https://qubeshub.org/publications/1560/?v=1

7. Lesson I - Introduction to Genome Solver

   31 Oct 2018 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.

   https://qubeshub.org/publications/808/?v=1

8. Lesson II - Databases

   31 Oct 2018 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

   https://qubeshub.org/publications/855/?v=1

9. Lesson III - Annotation

   05 Aug 2020 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/publications/856/?v=3

10. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=2

11. Lesson III - Annotation

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=1

12. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=2

13. Lesson IV - Comparative Genomics

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=1

14. Lesson V - Phylogenetics

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/publications/858/?v=2

15. Lesson V - Phylogenetics

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/publications/858/?v=1

16. Lesson VI - The Community Science Project

    19 Nov 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

    https://qubeshub.org/publications/859/?v=2

17. Lesson VI - The Community Science Project

    31 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

    https://qubeshub.org/publications/859/?v=1

18. Lesson VII - Synteny

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Gaurav Arora¹, Anne Rosenwald², Vinayak Mathur³

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=3

19. Lesson VII - Synteny

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Gaurav Arora¹, Anne Rosenwald², Vinayak Mathur³

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=2

20. Mini-Workshop August 14, 2020

    28 Aug 2020 | Teaching Materials | Contributor(s):

    By Vinayak Mathur¹, Anne Rosenwald², Gaurav Arora³

    1. Cabrini University 2. Georgetown University 3. Gallaudet University

    We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

    https://qubeshub.org/publications/2084/?v=1