Teaching Materials (1-20 of 32)

1. Lesson III - Annotation

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/publications/856/?v=4

2. Lesson II - Databases

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

   https://qubeshub.org/publications/855/?v=3

3. Lesson VI - The Community Science Project

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

   https://qubeshub.org/publications/859/?v=3

4. Lesson II - Databases

   30 Sep 2022 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson II introduces the principal databases for microbial...

   https://qubeshub.org/publications/855/?v=2

5. Pre-lesson: Introduction to BLAST

   22 Sep 2021 | Teaching Materials | Contributor(s):

   By Sarah Prescott

   BioQUEST - Executive Director / UNH - Assoc. Prof./Chief Editor-GCTLC

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

   https://qubeshub.org/publications/2755/?v=1

6. Pre-lesson: Introduction to BLAST

   22 Sep 2021 | Teaching Materials | Contributor(s):

   By Sarah Prescott

   BioQUEST - Executive Director / UNH - Assoc. Prof./Chief Editor-GCTLC

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

   https://qubeshub.org/publications/2754/?v=1

7. MiniWorkshop Follow-Up October 2, 2020

   03 Oct 2020 | Teaching Materials | Contributor(s):

   By Gaurav Arora¹, Vinayak Mathur²

   1. Gallaudet University 2. Cabrini University

   A follow up to our mini workshop of August 14, 2020. Further information about the python pipeline for HGT and the new cytoscape lesson.

   https://qubeshub.org/publications/2113/?v=1

8. Mini-Workshop August 14, 2020

   28 Aug 2020 | Teaching Materials | Contributor(s):

   By Vinayak Mathur¹, Anne Rosenwald², Gaurav Arora³

   1. Cabrini University 2. Georgetown University 3. Gallaudet University

   We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

   https://qubeshub.org/publications/2084/?v=1

9. Pre-lesson: Introduction to BLAST

   05 Aug 2020 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. This pre-lesson introduces the BLAST tool.

   https://qubeshub.org/publications/1085/?v=2

10. Lesson VII - Synteny

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Gaurav Arora¹, Anne Rosenwald², Vinayak Mathur³

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=3

11. Lesson III - Annotation

    05 Aug 2020 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/publications/856/?v=3

12. Exploring the evolution of caffeine biosynthesis enzymes

    22 Jan 2020 | Teaching Materials | Contributor(s):

    By Shuchismita Dutta

    RCSB Protein Data Bank, Rutgers University

    Caffeine is a very common stimulant consume worldwide as tea, coffee, mate, cocoa, and chocolate. Ever wondered why plants make caffeine? Do all caffeine producing plants have the same enzymes for...

    https://qubeshub.org/publications/1723/?v=1

13. BLAST Exercises for Analyzing Cloning Results

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Erin R. Morris

    Baker University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. These activities have modified Lesson 1: Introduction to Genome...

    https://qubeshub.org/publications/1734/?v=1

14. Databases: A Study of Influenza

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This lesson introduces the student to the Influenza Research Database. Students will select Influenza genome sequences to see how they are related. Students tests hypotheses about evolutionary...

    https://qubeshub.org/publications/1642/?v=1

15. Introduction to Genome Annotation

    09 Jan 2020 | Teaching Materials | Contributor(s):

    By Selene Nikaido

    University of Central Missouri

    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    https://qubeshub.org/publications/1560/?v=1

16. Lesson VI - The Community Science Project

    19 Nov 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver's Community Science Project was developed as a way to use the skills taught in the previous lessons. We're asking members of the community to provide instances of potential phage...

    https://qubeshub.org/publications/859/?v=2

17. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

18. Lesson V - Phylogenetics

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/publications/858/?v=2

19. Lesson VII - Synteny

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Gaurav Arora¹, Anne Rosenwald², Vinayak Mathur³

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/publications/1414/?v=2

20. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/publications/857/?v=2