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Tags: BLAST

All Categories (1-20 of 34)

  1. A Critical Guide to BLAST

    04 Dec 2020 | Teaching Materials | Contributor(s):

    By Teresa Attwood1, GOBLET Foundation

    The University of Manchester, Manchester, UK

    This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.

    https://qubeshub.org/publications/2172/?v=1

  2. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=1

  3. Bioinformatics - Investigating Sequence Similarity

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=2

  4. Bioinformatics - Investigating Sequence Similarity

    05 Jul 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3, Carlos Christopher Goller4, Sabrina Robertson5

    1. Adams State University 2. Hampshire College 3. Alabama State University 4. North Carolina State University 5. NC State

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=3

  5. Bioinformatics - Investigating Sequence Similarity

    04 Dec 2018 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3

    1. Adams State University 2. Fairmont State University 3. North Carolina State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/56/?v=4

  6. Bioinformatics Module I

    Collections | 12 Sep 2018 | Posted by Wilson Leung

    https://qubeshub.org/community/groups/gea/collections/research-modules-from-the-ciliate-genomics-consortium

  7. Bioinformatics Module II

    Collections | 12 Sep 2018 | Posted by Wilson Leung

    https://qubeshub.org/community/groups/gea/collections/research-modules-from-the-ciliate-genomics-consortium

  8. Bioinformatics: An Interactive Introduction to NCBI

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Seth Bordenstein

    Marine Biological Laboratory

    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

    https://qubeshub.org/publications/989/?v=1

  9. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/publications/1247/?v=1

  10. BSL-4: Authorized Personnel Only

    17 Aug 2020 | Teaching Materials | Contributor(s):

    By Nicole Anthony

    Biological Sciences, Toronto District School Board

    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    https://qubeshub.org/publications/795/?v=1

  11. Colon Cancer: A Case of Genetic Bad Luck

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Anne M. Casper

    Eastern Michigan University

    Case study developed for an introductory genetics class published in the National Center for Case Study Teaching in Science

    https://qubeshub.org/publications/992/?v=1

  12. COVID-19: On the way to a vaccine

    13 Jun 2020 | Teaching Materials | Contributor(s):

    By Nik Tsotakos

    Penn State Harrisburg

    This multi-part case study introduces the reader to the SARS-CoV-2 virus origins, the molecular basis of the infection, the development and severity of symptoms, and treatment.

    https://qubeshub.org/publications/1918/?v=1

  13. Developing a phylogram from computational resources.

    01 Jun 2021 | Teaching Materials | Contributor(s):

    By Melanie Lenahan1, Shea Cinquemani1

    Raritan Valley Community College

    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/publications/2404/?v=1

  14. DNA Subway Learning Resources

    16 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    Cold Spring Harbor Laboratory

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=1

  15. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=2

  16. GEA Introductory lesson on BLAST

    25 Jul 2020 | Teaching Materials | Contributor(s):

    By Justin DiAngelo1, Alexis Nagengast2, Wilson Leung3, Douglas L Chalker3

    1. Penn State Berks 2. Widener University 3. Washington University in St. Louis

    The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

    https://qubeshub.org/publications/1987/?v=1

  17. Hemoglobin bioinformatics

    07 Jun 2021 | Teaching Materials | Contributor(s):

    By Keith A. Johnson

    Bradley University College of Liberal Arts and Sciences

    This is an introduction to bioinformatics using hemoglobin as an example. The worksheets introduce students to resources to explore the DNA, RNA and polypeptide linear structure with a brief...

    https://qubeshub.org/publications/2416/?v=1

  18. Inquiry-based hypothesis testing using phylogenetic trees in MEGA

    17 Jun 2021 | Teaching Materials | Contributor(s):

    By Kristin Hultgren

    Seattle University

    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    https://qubeshub.org/publications/2379/?v=1

  19. Intro to DNA Barcoding

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    https://qubeshub.org/publications/600/?v=1

  20. Intro to DNA Subway Blue Line

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    https://qubeshub.org/publications/599/?v=1