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Tags: C2. Computational concepts

All Categories (1-11 of 11)

  1. Biodiversity Literacy in Undergraduate Education (BLUE): Building standards and resources for using collections data in the classroom

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Molly Phillips1, Debra Linton2, Libby Ellwood3, Natalie Douglas2, Lisa White4, Anna Monfils2

    1. iDigBio, Florida Museum of Natural History, University of Florida 2. Central Michigan University 3. La Brea Tar Pits and Museum, Natural History Museum of Los Angeles County 4. University of California Museum of Paleontology, UC Berkeley

    Abstract for poster on using collections data presented at the 2019 BioQUEST & QUBES Summer Workshop

    https://qubeshub.org/qubesresources/publications/1324/?v=1

  2. Sequence Similarity in Developmental Biology - A Bioinformatics Exercise Using Myostatin

    19 Jun 2019 | Teaching Materials | Contributor(s):

    By Barbara Murdoch

    Eastern Connecticut State University

    This exercise leads upper level biology majors in an inquiry-based excursion to determine how similar the signaling molecule, myostatin, is between humans and mice, using a basic set of...

    https://qubeshub.org/qubesresources/publications/1317/?v=1

  3. Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Recent Activities

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By William Morgan

    The College of Wooster

    Presentation on NIBLSE at the 2019 Great Lakes Bioinformatics Conference

    https://qubeshub.org/qubesresources/publications/1210/?v=1

  4. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1

  5. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/qubesresources/publications/1219/?v=1

  6. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  7. Developing Quantitative Skills Using HHMI BioInteractive Resources

    24 Feb 2019 | Teaching Materials | Contributor(s):

    By Robin Bulleri1, Kristine Grayson2, Melissa Csikari3

    1. Carrboro High School 2. University of Richmond 3. Howard Hughes Medical Institute

    A workshop on using HHMI BioInteractive data activities to teach science content and quantitative skills

    https://qubeshub.org/qubesresources/publications/1090/?v=1

  8. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/qubesresources/publications/165/?v=1

  9. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  10. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1

  11. Needleman - Wunsch Algorithm Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Michael Sierk

    Saint Vincent College

    This exercise is used in a sophomore-junior level bioinformatics course. The algorithm is introduced to the students who then complete the exercise.

    https://qubeshub.org/qubesresources/publications/28/?v=1