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Tags: C5. Data retrieval

All Categories (1-20 of 21)

  1. Using Synthetic Biology to Teach Data Science

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Abstract for poster on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/qubesresources/publications/1326/?v=1

  2. Biodiversity Literacy in Undergraduate Education (BLUE): Building standards and resources for using collections data in the classroom

    26 Jun 2019 | Teaching Materials | Contributor(s):

    By Molly Phillips1, Debra Linton2, Libby Ellwood3, Natalie Douglas2, Lisa White4, Anna Monfils2

    1. iDigBio, Florida Museum of Natural History, University of Florida 2. Central Michigan University 3. La Brea Tar Pits and Museum, Natural History Museum of Los Angeles County 4. University of California Museum of Paleontology, UC Berkeley

    Abstract for poster on using collections data presented at the 2019 BioQUEST & QUBES Summer Workshop

    https://qubeshub.org/qubesresources/publications/1324/?v=1

  3. Sequence Similarity in Developmental Biology - A Bioinformatics Exercise Using Myostatin

    19 Jun 2019 | Teaching Materials | Contributor(s):

    By Barbara Murdoch

    Eastern Connecticut State University

    This exercise leads upper level biology majors in an inquiry-based excursion to determine how similar the signaling molecule, myostatin, is between humans and mice, using a basic set of...

    https://qubeshub.org/qubesresources/publications/1317/?v=1

  4. Frayer model growth mindset

    01 Jun 2019 | Teaching Materials | Contributor(s):

    By Heather McGray

    San Diego City College

    A Frayer model worksheet for the concept of growth mindset.

    https://qubeshub.org/qubesresources/publications/1272/?v=1

  5. Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach

    29 May 2019 | Teaching Materials | Contributor(s):

    By Ami Erickson

    This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...

    https://qubeshub.org/qubesresources/publications/1247/?v=1

  6. Sequence Similarity Resource Adaptation: Exploring Ebola Virus

    16 May 2019 | Teaching Materials | Contributor(s):

    By William Tapprich

    University of Nebraska-Omaha

    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    https://qubeshub.org/qubesresources/publications/1219/?v=1

  7. Population Demography in Swirl

    15 May 2019 | Teaching Materials | Contributor(s):

    By Emily Weigel

    Georgia Institute of Technology

    The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.

    https://qubeshub.org/qubesresources/publications/1214/?v=1

  8. Species Range Over Space and Time

    19 Mar 2019 | Teaching Materials | Contributor(s):

    By Debra Linton1, Anna Monfils1, Libby Ellwood2, Molly Phillips3

    1. Central Michigan University 2. iDigBio 3. iDigBio, Florida Museum of Natural History, University of Florida

    In this module, students use data from natural history collections to look at range shifts related to climate variables over different time periods.

    https://qubeshub.org/qubesresources/publications/1106/?v=1

  9. Liberating Data for Biodiversity Research

    19 Mar 2019 | Teaching Materials | Contributor(s):

    By Libby Ellwood1, Austin Mast2

    1. iDigBio 2. Florida State University

    The objectives of this exercise are to familiarize you with the information content of biodiversity specimens and their labels, the breadth of that information across geographic space and/or time.

    https://qubeshub.org/qubesresources/publications/1104/?v=1

  10. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    28 Feb 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=1

  11. Developing Quantitative Skills Using HHMI BioInteractive Resources

    24 Feb 2019 | Teaching Materials | Contributor(s):

    By Robin Bulleri1, Kristine Grayson2, Melissa Csikari3

    1. Carrboro High School 2. University of Richmond 3. Howard Hughes Medical Institute

    A workshop on using HHMI BioInteractive data activities to teach science content and quantitative skills

    https://qubeshub.org/qubesresources/publications/1090/?v=1

  12. Getting students to reason with data: QUBES tools and teaching resources built for introductory biology

    21 Feb 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    Workshop presented at the 2019 Biology Learning Community Conference

    https://qubeshub.org/qubesresources/publications/1088/?v=1

  13. Finding Selection in All the Right Places

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Juliet F. K. Noor, Mohamed A. F. Noor

    Lab introducing students to evolutionary genetics using bioinformatics and biocuration, published as GSA Learning Resource

    https://qubeshub.org/qubesresources/publications/994/?v=1

  14. Exploration of the Human Genome by Investigation of Personalized SNPs

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Lani C. Keller

    Quinnipiac University

    To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...

    https://qubeshub.org/qubesresources/publications/993/?v=1

  15. Bioinformatics: An Interactive Introduction to NCBI

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Seth Bordenstein

    Marine Biological Laboratory

    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

    https://qubeshub.org/qubesresources/publications/989/?v=1

  16. The Ames Test

    03 Jan 2019 | Teaching Materials | Contributor(s):

    By Nathan Goodson-Gregg, Elizabeth A. De Stasio

    Introduction to the Ames Test, published as GSA Learning Resource

    https://qubeshub.org/qubesresources/publications/987/?v=1

  17. BSL-4: Authorized Personnel Only

    24 Sep 2018 | Teaching Materials | Contributor(s):

    By Nicole Anthony

    Biological Sciences, Toronto District School Board

    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    https://qubeshub.org/qubesresources/publications/795/?v=1

  18. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/qubesresources/publications/165/?v=1

  19. Bioinformatics: CpG Islands

    17 Oct 2017 | Teaching Materials | Contributor(s):

    By Edward Himelblau

    California Polytechnic State University

    This is an introductory bioinformatics exercise intended for use in a genetics course.

    https://qubeshub.org/qubesresources/publications/147/?v=1

  20. Bioinformatics - Investigating Sequence Similarity

    31 Jan 2017 | Teaching Materials | Contributor(s):

    By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3

    1. Adams State University 2. Hampshire College 3. Alabama State University

    This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    https://qubeshub.org/qubesresources/publications/56/?v=1