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C6. Explore and/or model biological interactions, networks and data integration using bioinformatics. Modeling of biological systems at all levels, from cellular to ecological, is being facilitated by technological and algorithmic advances. These models provide novel insights into the perturbations in systems that can cause disease, interactions of microbes with various eukaryotic systems, how metabolic networks respond to environmental stresses, etc. Students should be familiar with the techniques used to generate these analyses and should be able to interpret the outputs and use the data to generate novel hypotheses.

  • Predict impact of a gene knockout on a cell-signaling pathway.
  • Analyze gene expression data to build an expression network.
  • Analyze metagenomics data from microbial samples obtained from environmental sources. 

All Categories (1-4 of 4)

  1. Genome Solver: Complete Set of Lessons

    23 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=2

  2. Complete Set of Lessons

    01 Nov 2018 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating with...

    https://qubeshub.org/publications/860/?v=1

  3. Wolf Sheep Predation Simulation Exercise

    05 Jun 2017 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/publications/29/?v=2

  4. Wolf Sheep Predation Simulation Exercise

    03 Aug 2016 | Teaching Materials | Contributor(s):

    By Liz Ryder

    Worcester Polytechnic Institute

    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    https://qubeshub.org/publications/29/?v=1

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