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REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
28 Aug 2019 | Teaching Materials | Contributor(s):
By Jessica Joyner
CUNY Brooklyn College
Video on normalizing microbiome data from the Research Experiences in Microbiomes Network
REMNet Tutorial, R Part 4: Creating Taxa Plots in R 5.2.19
Video on making taxa bar plots in R from the Research Experiences in Microbiomes Network
REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network
Aquatic Nutrient Levels and Climate Change
16 Jul 2019 | Teaching Materials | Contributor(s):
By Elli Bosch1, Kaycee Faunce1, Amanda Thompson
Virginia Commonwealth University
This learning module was designed to introduce students to the aquatic nutrients nitrogen and phosphorus, their roles in ecosystem function and nutrient pollution, and what impacts climate change...
Striped Bass: A Regulatory Success Story
12 Jul 2019 | Teaching Materials | Contributor(s):
By J. Alexander McCrickard1, Angela Hanretty1, Amanda Thompson1
This module examines the Maryland striped bass moratorium (1985-1989) as a fisheries management success story. Maryland DNR striped bass young of the year data is utilized for least squares linear...
The Polar Bear of the Salt Marsh? Warming Tolerance Limits of Local Species
13 May 2019 | Teaching Materials | Contributor(s):
By Angela Dassow1, Sheryl Konrad1
National Center for Case Study Teaching in Science- In the adaptation exercise, students explore connections between saltmarsh sparrow declines and declining populations of local species that live...
Island biogeography, spatial ecology, and macroinvertebrate species diversity in Richmond’s rock pools
22 Feb 2019 | Teaching Materials | Contributor(s):
By Nadia Bukach1, Todd Lookingbill1, Andrew Davidson2, James R Vonesh2, Kristine Grayson1
1. University of Richmond 2. Virginia Commonwealth University
Students investigate questions of community ecology and biogeography using data from an urban rock pool ecosystem. Using ArcGIS 10, students learn to create effective maps, calculate landscape...
Data simulation and randomization tests
03 Jan 2019 | Teaching Materials | Contributor(s):
By James S. Santangelo
University of Toronto
A participatory live-coding lesson on simulating data and performing randomization tests on ecological data in R.
Developing quantitative skills for ecological data: the effects of climate warming on phenological variation and species interactions
21 Nov 2018 | Teaching Materials | Contributor(s):
By Jill Hamilton1, Zachary Tarble1
North Dakota State University
Students combine long-term observational data sets and experimental warming in an alpine meadow in Gothic, CO to test, evaluate, and interpret ecological data focusing on phenological variation and...
Computational Biology using R
30 Oct 2018 | Teaching Materials | Contributor(s):
By Hong Qin
University of Tennessee Chattanooga
This is an introductory level course on computational biology.
By Bodo Winter1, Sven Grawunder2
1. Department of Cognitive and Information Sciences, University of California, Merced 2. Department of Linguistics, Max Planck Institute for Evolutionary Anthropology
The dataset recorded properties of formal and informal speech registers in Korean.
Statistical Exploration of Climate Data
By Tamra Carpenter1, Jon Kettenring2, Robert Vanderbei3
1. DIMACS, Rutgers University 2. Research Institute for Scientists Emeriti, Drew University 3. Princeton University
In this module the students will learn some basic concepts in statistical thinking about data, with emphasis on exploratory data analysis.
Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Exercise 10 [Elevation]
26 Oct 2018 | Teaching Materials | Contributor(s):
By Steven F Railsback1, Volker Grimm
Lang Railsback & Associates
Supplemental data for ABM
BioNumbers: The Database of Useful Biological Numbers
17 Oct 2018 | Teaching Materials | Contributor(s):
By Ron Milo1, Paul Jorgensen2, Michael Springer2
1. Weizmann Institute of Science 2. Harvard Medical School
A database of biological numbers that you can search and browse.
3D breast cancer tissue reconstruction image files
17 Sep 2018 | Teaching Materials | Contributor(s):
By Jeremy M Wojdak
Database of image files for AIMS Resource: 3D breast cancer tissue reconstruction
11 Sep 2018 | Teaching Materials | Contributor(s):
Database of image files for AIMS Resource: Dendroclimatology
Phenotypic plasticity and predation image files
29 Aug 2018 | Teaching Materials | Contributor(s):
Database of image files for AIMS Resource: Phenotypic plasticity and predation
Investigating the effects of urbanization on bird biodiversity: Testing three biodiversity hypotheses using citizen science data
13 Jun 2018 | Teaching Materials | Contributor(s):
By Jennifer Kovacs1, Ebony Gaillard2
1. Spelman College 2. University of North Carolina
Students generate predictions and test three hypotheses about how biodiversity is affected by urbanization over time using citizen science generated bird count data and land use data from 13...
Climate Change and Phenology: Evaluating Temperature, Precipitation, and Phenology of Frogs and Toads in Minnesota
12 Jun 2018 | Teaching Materials | Contributor(s):
By Kristen Genet
Anoka-Ramsey Community College
Students evaluate long term (100+ years) trends in temperature and precipitation, and then isolate a shorter time span (20 years) in which to evaluate the correlation between spring temps and the...
By Arietta Fleming-Davies1, Skylar Hopkins2
1. QUBES; Radford University 2. UC Santa Barbara and Virginia Tech
This module explores the effects of host density on contact rates and transmission of pathogens or mutualist symbionts using a hands-on simulation, a computer agent-based model in NetLogo, and an...